| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is rnr [H]
Identifier: 182681418
GI number: 182681418
Start: 1018836
End: 1021352
Strand: Direct
Name: rnr [H]
Synonym: XfasM23_0868
Alternate gene names: 182681418
Gene position: 1018836-1021352 (Clockwise)
Preceding gene: 182681417
Following gene: 182681419
Centisome position: 40.18
GC content: 55.98
Gene sequence:
>2517_bases ATGAAGAAAAAAACCACTAAGGGCGCTCAAGCGCCACATACTGCAATTACCACTACGTCTGCTGCTGCAAAGCGTCAGCG TGTCTCGGTTCAATCCAAGGTCAAGGTGCCTTCGAACAAGAAGAAGCAGGGTGCTGACGTTAAGCAACAGGAAGATGCCA AGTTGTCGCCAGTAAAGCGGTTACGTCAACCGAATGCTCCCAGGCAGCAGGCACCCAAAGCGCCTTCTACTAAGAAGGCA TCAGTACGTTCAGCTCGGGCTGCAGCATCAGTGCCTTTTCAGGATCAGCATGCGGCGCGTGAGGCCGAACGCTATGCTGA GCCGATTGCGAGTCGTGAGGCGATCCTTGATTTGCTGGATGCGTGCGATGGCCCACAGACGGCGGAGGAGATTGCTGATC GGTTCGGGGTGACTGATCGCATTGAGATTCTTGGGCGCCGTCTGGGTGCGATGGTACGTGATGGTCAGTTAGTGCAGAAC CGCCGTGGTGGTTTTGCGCCGGTGCAACATACTAATCTGATCGCTGGTACGGTGATTGCCAATCCGGATGGTTTCGGCTT CCTCAAGCCGGATGAGGGAGGGGACGATCTGTTTTTACCTCCCTTCGAGATGCGCAAGGTGATGCACGGTGATCGGGTGC TGGTGAATCTCACGGGCATTGACCGTCGCGGTCGCCGTGAGGGGATGATTGCACGTGTGTTGGAACGTCGGATGAGCCGT CTGGTCGGACGTTTTTTCTATGAACTTGGCATCGCTTATGTTGAGCCGGACGATAAGCGTTTGCAGCGTAACGTGCAGAT TCCGCCGGAGCACATCGGCGGTGCATCGGAAGGGCAATTGGTGGTGTGTGAATTGGTTGTGCCTCCAGACACACGCCGTC CGGCGATTGGGCGCATTTTGGCGGTGCTTGGTGAGGCGTTGACTCCGTCGTTGGTTGTTGAGACAGCTATTCATGGTCAT CAGTTGCCGCATGTGTTTCCACAGGACGTGTTGGATGCGGCGGCGGCGGTGCCGTTGACGGTAACTCCAGGGATGCTTGG CGGACGTGTGGATCTGCGTGCGCTGCCCCTTGTGACAATTGATGGTGAGGATGCGAAAGATTTTGATGATGCGGTGTACT GCGAATCCAATCGTGGGGGGGTTCGTTTGGTCGTGGCGATTGCCGACGTTTCGCATTATGTGCGTCCAGGGACGCCGCTG GACGAAGAGGCGCTCACGCGCGCTACATCGGTGTATTTCCCGGGCTTTGTTGTGCCGATGTTGCCGGAGACGTTGTCCAA TGGAATCTGCTCGTTGAAGCCCAATGTGGACAGGATGTGTTTTGTGTGTGAGATGCAGATCGATCGCAAGGGGGAGGTCA AGTCTTCATCCTTCTACGAGGCGGTGATGAACTCGCATGCGCGTCTGACGTATACGCAGGTTTGGAAGGCCGTGGGTGAG GAGGATGCGCAGGCACAGGCGCAGATTGGTACGTTGTTGCCGCAGGTGCAGCAGTTGCATCGGTTGTATCAGGTGCTGGC CAAGGCGCGCGCTCAGCGGGGGGCGATTGAATTTGAGTCATCGGAAGTCCGTTTTGTGCTGGACAATCGCGGCGAGGTGA CTCAGGCCGGGATGTTGATGCGCAATGATGCGCATAAGTTGATTGAGGAATGCATGATTGTTGCCAATGTGCAGGCCGCG CATTTTTTGCTCAATGCGGGGGTACAGGCACCGTATCGCATCCATGAGCGGCCACCGGAAAGTAAATACGCCGATTTGTT GGAGTTTCTCAAAGAATTTAAGCTCAGTTTGCCGGCGTGGGGGAAGGTGCAGCCCGGTGACTTTACTAAGTTGCTGAAAA AGGTTCGGGAGCGTCCAGAGGCGGCATTGCTGGAGTCGGTGTTGTTGCGCAGCCAAAGTTTGGCGGTGTATTCGGCTGAC AATCGCGGCCATTTCGGTTTGGCGCTGGATGGCTATGCGCACTTTACTTCGCCAATTCGGCGCTATCCTGATCTTTTGGT GCACCGTGCGATCAAGCATGCGCTCAGTGGTGCTGCACCGGACTGCTTCCTGTATACGCCGCGTGACATGGTCGCATTGG CATTGGTGTGTTCTAGTCGTGAGCGTCGCGCCGATGAGGCGGAACGCGAGGTGGATGAGCGCTATCGTGCTGCATGGATG GAACGGCATGTTGGCAGTGAGTTTGATGGTGTGATCAGTGGTGTCACCAGTTTCGGTTTGTTCGTGGAGTTGGAGCAGTC TAAGGTCACAGGGTTGGTCCATGTGACCCAATTGCCGCAGGATTATTATTCCTTTGATCCGATTCGCAAGGTGCTGGTTG GTCAGCGTCGTGGCCGTGTGTTCCGGCTTGGTGATCGCCTGCGTGTCTTGGTGCTTAAAGCCAGTATGGAGGAGCGTAAG ATCGATTTCCGGTTGGTTGACCAGTCAATGCATGAGCAGGTTACGCGGGAGGTGTCGCCTCCGGTGCTACGTGGCAAGGC GACGACCAAGCGTAAAAAGGGCGTCAAGACGCGGTGA
Upstream 100 bases:
>100_bases TTGAACAAGTGAAGGCTGTGAATGATTTTTACTGAATTAGCCTATCTAAGGTGACTGTTTCAGCGGACGTGATGCGTGCT CACAGGTAACATGGGTGGTC
Downstream 100 bases:
>100_bases TCTGTTGAGGTTTTGCGGGCGAAGCGGTTGTATGTGACGTCACATTGATGTTTGGGGCTGACCGCAGTTGGTTTGAAGGT GCTGTGTCGCACTTGGCGAG
Product: ribonuclease R
Products: NA
Alternate protein names: RNase R; Protein vacB [H]
Number of amino acids: Translated: 838; Mature: 838
Protein sequence:
>838_residues MKKKTTKGAQAPHTAITTTSAAAKRQRVSVQSKVKVPSNKKKQGADVKQQEDAKLSPVKRLRQPNAPRQQAPKAPSTKKA SVRSARAAASVPFQDQHAAREAERYAEPIASREAILDLLDACDGPQTAEEIADRFGVTDRIEILGRRLGAMVRDGQLVQN RRGGFAPVQHTNLIAGTVIANPDGFGFLKPDEGGDDLFLPPFEMRKVMHGDRVLVNLTGIDRRGRREGMIARVLERRMSR LVGRFFYELGIAYVEPDDKRLQRNVQIPPEHIGGASEGQLVVCELVVPPDTRRPAIGRILAVLGEALTPSLVVETAIHGH QLPHVFPQDVLDAAAAVPLTVTPGMLGGRVDLRALPLVTIDGEDAKDFDDAVYCESNRGGVRLVVAIADVSHYVRPGTPL DEEALTRATSVYFPGFVVPMLPETLSNGICSLKPNVDRMCFVCEMQIDRKGEVKSSSFYEAVMNSHARLTYTQVWKAVGE EDAQAQAQIGTLLPQVQQLHRLYQVLAKARAQRGAIEFESSEVRFVLDNRGEVTQAGMLMRNDAHKLIEECMIVANVQAA HFLLNAGVQAPYRIHERPPESKYADLLEFLKEFKLSLPAWGKVQPGDFTKLLKKVRERPEAALLESVLLRSQSLAVYSAD NRGHFGLALDGYAHFTSPIRRYPDLLVHRAIKHALSGAAPDCFLYTPRDMVALALVCSSRERRADEAEREVDERYRAAWM ERHVGSEFDGVISGVTSFGLFVELEQSKVTGLVHVTQLPQDYYSFDPIRKVLVGQRRGRVFRLGDRLRVLVLKASMEERK IDFRLVDQSMHEQVTREVSPPVLRGKATTKRKKGVKTR
Sequences:
>Translated_838_residues MKKKTTKGAQAPHTAITTTSAAAKRQRVSVQSKVKVPSNKKKQGADVKQQEDAKLSPVKRLRQPNAPRQQAPKAPSTKKA SVRSARAAASVPFQDQHAAREAERYAEPIASREAILDLLDACDGPQTAEEIADRFGVTDRIEILGRRLGAMVRDGQLVQN RRGGFAPVQHTNLIAGTVIANPDGFGFLKPDEGGDDLFLPPFEMRKVMHGDRVLVNLTGIDRRGRREGMIARVLERRMSR LVGRFFYELGIAYVEPDDKRLQRNVQIPPEHIGGASEGQLVVCELVVPPDTRRPAIGRILAVLGEALTPSLVVETAIHGH QLPHVFPQDVLDAAAAVPLTVTPGMLGGRVDLRALPLVTIDGEDAKDFDDAVYCESNRGGVRLVVAIADVSHYVRPGTPL DEEALTRATSVYFPGFVVPMLPETLSNGICSLKPNVDRMCFVCEMQIDRKGEVKSSSFYEAVMNSHARLTYTQVWKAVGE EDAQAQAQIGTLLPQVQQLHRLYQVLAKARAQRGAIEFESSEVRFVLDNRGEVTQAGMLMRNDAHKLIEECMIVANVQAA HFLLNAGVQAPYRIHERPPESKYADLLEFLKEFKLSLPAWGKVQPGDFTKLLKKVRERPEAALLESVLLRSQSLAVYSAD NRGHFGLALDGYAHFTSPIRRYPDLLVHRAIKHALSGAAPDCFLYTPRDMVALALVCSSRERRADEAEREVDERYRAAWM ERHVGSEFDGVISGVTSFGLFVELEQSKVTGLVHVTQLPQDYYSFDPIRKVLVGQRRGRVFRLGDRLRVLVLKASMEERK IDFRLVDQSMHEQVTREVSPPVLRGKATTKRKKGVKTR >Mature_838_residues MKKKTTKGAQAPHTAITTTSAAAKRQRVSVQSKVKVPSNKKKQGADVKQQEDAKLSPVKRLRQPNAPRQQAPKAPSTKKA SVRSARAAASVPFQDQHAAREAERYAEPIASREAILDLLDACDGPQTAEEIADRFGVTDRIEILGRRLGAMVRDGQLVQN RRGGFAPVQHTNLIAGTVIANPDGFGFLKPDEGGDDLFLPPFEMRKVMHGDRVLVNLTGIDRRGRREGMIARVLERRMSR LVGRFFYELGIAYVEPDDKRLQRNVQIPPEHIGGASEGQLVVCELVVPPDTRRPAIGRILAVLGEALTPSLVVETAIHGH QLPHVFPQDVLDAAAAVPLTVTPGMLGGRVDLRALPLVTIDGEDAKDFDDAVYCESNRGGVRLVVAIADVSHYVRPGTPL DEEALTRATSVYFPGFVVPMLPETLSNGICSLKPNVDRMCFVCEMQIDRKGEVKSSSFYEAVMNSHARLTYTQVWKAVGE EDAQAQAQIGTLLPQVQQLHRLYQVLAKARAQRGAIEFESSEVRFVLDNRGEVTQAGMLMRNDAHKLIEECMIVANVQAA HFLLNAGVQAPYRIHERPPESKYADLLEFLKEFKLSLPAWGKVQPGDFTKLLKKVRERPEAALLESVLLRSQSLAVYSAD NRGHFGLALDGYAHFTSPIRRYPDLLVHRAIKHALSGAAPDCFLYTPRDMVALALVCSSRERRADEAEREVDERYRAAWM ERHVGSEFDGVISGVTSFGLFVELEQSKVTGLVHVTQLPQDYYSFDPIRKVLVGQRRGRVFRLGDRLRVLVLKASMEERK IDFRLVDQSMHEQVTREVSPPVLRGKATTKRKKGVKTR
Specific function: 3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs. Required for the expression of virulence genes in enteroinvasive strains of E.coli [H]
COG id: COG0557
COG function: function code K; Exoribonuclease R
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Homo sapiens, GI190014623, Length=473, Percent_Identity=31.2896405919662, Blast_Score=197, Evalue=3e-50, Organism=Homo sapiens, GI190014625, Length=473, Percent_Identity=31.2896405919662, Blast_Score=197, Evalue=5e-50, Organism=Homo sapiens, GI134288890, Length=497, Percent_Identity=27.5653923541247, Blast_Score=152, Evalue=9e-37, Organism=Homo sapiens, GI219521928, Length=453, Percent_Identity=27.8145695364238, Blast_Score=139, Evalue=1e-32, Organism=Homo sapiens, GI19115966, Length=453, Percent_Identity=27.8145695364238, Blast_Score=139, Evalue=1e-32, Organism=Escherichia coli, GI87082383, Length=724, Percent_Identity=49.0331491712707, Blast_Score=682, Evalue=0.0, Organism=Escherichia coli, GI1787542, Length=647, Percent_Identity=28.7480680061824, Blast_Score=196, Evalue=4e-51, Organism=Caenorhabditis elegans, GI212645896, Length=433, Percent_Identity=31.1778290993072, Blast_Score=173, Evalue=4e-43, Organism=Caenorhabditis elegans, GI17553506, Length=501, Percent_Identity=26.7465069860279, Blast_Score=159, Evalue=6e-39, Organism=Saccharomyces cerevisiae, GI6324552, Length=439, Percent_Identity=30.751708428246, Blast_Score=166, Evalue=2e-41, Organism=Saccharomyces cerevisiae, GI6323943, Length=429, Percent_Identity=24.2424242424242, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24649634, Length=434, Percent_Identity=31.5668202764977, Blast_Score=194, Evalue=2e-49, Organism=Drosophila melanogaster, GI24654592, Length=463, Percent_Identity=28.2937365010799, Blast_Score=144, Evalue=3e-34, Organism=Drosophila melanogaster, GI19922976, Length=463, Percent_Identity=28.2937365010799, Blast_Score=144, Evalue=3e-34, Organism=Drosophila melanogaster, GI24654597, Length=463, Percent_Identity=28.2937365010799, Blast_Score=144, Evalue=3e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR022967 - InterPro: IPR013223 - InterPro: IPR001900 - InterPro: IPR022966 - InterPro: IPR004476 - InterPro: IPR011805 - InterPro: IPR013668 [H]
Pfam domain/function: PF08461 HTH_12; PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 93101; Mature: 93101
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: PS50126 S1 ; PS01175 RIBONUCLEASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKTTKGAQAPHTAITTTSAAAKRQRVSVQSKVKVPSNKKKQGADVKQQEDAKLSPVKR CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH LRQPNAPRQQAPKAPSTKKASVRSARAAASVPFQDQHAAREAERYAEPIASREAILDLLD HHCCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ACDGPQTAEEIADRFGVTDRIEILGRRLGAMVRDGQLVQNRRGGFAPVQHTNLIAGTVIA HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEEEEE NPDGFGFLKPDEGGDDLFLPPFEMRKVMHGDRVLVNLTGIDRRGRREGMIARVLERRMSR CCCCCEEECCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH LVGRFFYELGIAYVEPDDKRLQRNVQIPPEHIGGASEGQLVVCELVVPPDTRRPAIGRIL HHHHHHHHHCCEEECCCHHHHHCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHH AVLGEALTPSLVVETAIHGHQLPHVFPQDVLDAAAAVPLTVTPGMLGGRVDLRALPLVTI HHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEEEE DGEDAKDFDDAVYCESNRGGVRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPGFVVPM CCCCCCCCCCCEEEECCCCCEEEEEEEECHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHH LPETLSNGICSLKPNVDRMCFVCEMQIDRKGEVKSSSFYEAVMNSHARLTYTQVWKAVGE CHHHHCCCCEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC EDAQAQAQIGTLLPQVQQLHRLYQVLAKARAQRGAIEFESSEVRFVLDNRGEVTQAGMLM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCHHHHHHHH RNDAHKLIEECMIVANVQAAHFLLNAGVQAPYRIHERPPESKYADLLEFLKEFKLSLPAW HHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCC GKVQPGDFTKLLKKVRERPEAALLESVLLRSQSLAVYSADNRGHFGLALDGYAHFTSPIR CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCHHHHHHHHH RYPDLLVHRAIKHALSGAAPDCFLYTPRDMVALALVCSSRERRADEAEREVDERYRAAWM HHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ERHVGSEFDGVISGVTSFGLFVELEQSKVTGLVHVTQLPQDYYSFDPIRKVLVGQRRGRV HHHCCCHHHHHHHHHHHHCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCE FRLGDRLRVLVLKASMEERKIDFRLVDQSMHEQVTREVSPPVLRGKATTKRKKGVKTR EEECCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCC >Mature Secondary Structure MKKKTTKGAQAPHTAITTTSAAAKRQRVSVQSKVKVPSNKKKQGADVKQQEDAKLSPVKR CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH LRQPNAPRQQAPKAPSTKKASVRSARAAASVPFQDQHAAREAERYAEPIASREAILDLLD HHCCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ACDGPQTAEEIADRFGVTDRIEILGRRLGAMVRDGQLVQNRRGGFAPVQHTNLIAGTVIA HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEEEEE NPDGFGFLKPDEGGDDLFLPPFEMRKVMHGDRVLVNLTGIDRRGRREGMIARVLERRMSR CCCCCEEECCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH LVGRFFYELGIAYVEPDDKRLQRNVQIPPEHIGGASEGQLVVCELVVPPDTRRPAIGRIL HHHHHHHHHCCEEECCCHHHHHCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHH AVLGEALTPSLVVETAIHGHQLPHVFPQDVLDAAAAVPLTVTPGMLGGRVDLRALPLVTI HHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEEEE DGEDAKDFDDAVYCESNRGGVRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPGFVVPM CCCCCCCCCCCEEEECCCCCEEEEEEEECHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHH LPETLSNGICSLKPNVDRMCFVCEMQIDRKGEVKSSSFYEAVMNSHARLTYTQVWKAVGE CHHHHCCCCEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC EDAQAQAQIGTLLPQVQQLHRLYQVLAKARAQRGAIEFESSEVRFVLDNRGEVTQAGMLM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCHHHHHHHH RNDAHKLIEECMIVANVQAAHFLLNAGVQAPYRIHERPPESKYADLLEFLKEFKLSLPAW HHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCC GKVQPGDFTKLLKKVRERPEAALLESVLLRSQSLAVYSADNRGHFGLALDGYAHFTSPIR CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCHHHHHHHHH RYPDLLVHRAIKHALSGAAPDCFLYTPRDMVALALVCSSRERRADEAEREVDERYRAAWM HHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ERHVGSEFDGVISGVTSFGLFVELEQSKVTGLVHVTQLPQDYYSFDPIRKVLVGQRRGRV HHHCCCHHHHHHHHHHHHCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCE FRLGDRLRVLVLKASMEERKIDFRLVDQSMHEQVTREVSPPVLRGKATTKRKKGVKTR EEECCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 3058695; 1400189; 9603904 [H]