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The map label for this gene is xpsF [H]

Identifier: 182681323

GI number: 182681323

Start: 910964

End: 912181

Strand: Direct

Name: xpsF [H]

Synonym: XfasM23_0770

Alternate gene names: 182681323

Gene position: 910964-912181 (Clockwise)

Preceding gene: 182681322

Following gene: 182681324

Centisome position: 35.93

GC content: 53.78

Gene sequence:

>1218_bases
ATGCCGGTGTATCGCTATAAGGCGTTGGATGTGCGCGGTGACTTACTGGAAGGCCAGATGGAAGCAGCCAGTGAAGCCGA
GGTTGCCGCGCGGCTGCAAGAGCAGGGACATGTGCCTGTTGAGGCGAGTTTGTCCAACGGCGATGCGATCAGACCGTCAT
TGCGAAATTTTCTGGGTGAGAAGCCGTTTTCTGGTCTCGGCTTGATTCATTTCACTCAACAATTGGCGGCGTTGCTCGGC
GCCGGTCAACCTTTGGATCGTGCGCTTTCCATCTTGACGGATCTTCCGGATAACGAGAAGAGCCGCCGTATTATTGGTGA
CGTTTGCGACATTGTTCGTGGCGGTACTCCGTTGTCTATTGCCTTGGAACGTCAGCATGGTGTGTTTTCGAGGTTGTATG
TGACGATGGCACGTGCTGGTGAGAGTGGCGGCAATATGCCTGAGACGCTGCAGCGGCTGGCTGATTATCTGGAGCGTAAC
CAGGTGGTGCGTGCCAAGGTGATTAATGCGCTGATTTACCCGGTGATCCTGATTTTTGTGGTTGGCGGTGCGCTTGCCTT
TTTGCTTGGTTATGTTGTTCCGCAATTTGGCGCGATGTATGAGAGTTTGGATGTGGCGTTGCCGTGGTTTACCCAGGGCG
TGCTGGCATTGGGTCACTTCATCGGTGACTGGTGGTTTTTACTATTAGCGGTGATTTGCATCGGTATGATTTTTGTTGAG
CGTAAGCGGCGGGATGTTGCATTCCGTGCGCGGTTCGATACGTGGTTACTGCGTCAACGTCTGTTGGGTACGCTGATTGT
TAAGTTGGAGACTGCCCGGTTGGCACGTACATTGGGTACCTTGCTGCGCAACGGTGTGCCGTTGTTAAGCGCGTTGAGGA
TTTCCCGTAATGTGTTGTCCAATGCAGCGTTGGTGGATGATCTTGGTAGCGTTGCCGAAGATGTGAAAAATGGTCTGGGA
TTGGCAGGAGCGTTGGGGCGTGGTAAGCGTTTCCCCCGCTTGGCGGTGCAGATGATTCAGGTTGGTGAGGAGTCCGGTAC
ATTGGATACGATGCTGCTCAAGGCGGCTAGCTCTTTCGAGCAGGAGACCACGGTGATGATTGATCGCTTGCTTGCTGCGC
TGGTGCCAGCGATCACGCTGGTGATGGCGATGATTATCGCTGTGGTGATTCTGTCGGTCTTGGTGCCGTTGTATGACCTG
ACCAATTCGATTGGCTGA

Upstream 100 bases:

>100_bases
TCATCAAGGCATTGGCTGGTGAGACCACGATTGAAGAGGTCTTGCGTGTGACGGAGGAAGGCTGAAGGTGTGGTTGCCAA
TGGACGTTGAGGGATAACAC

Downstream 100 bases:

>100_bases
TCAACGCTGTTTCTTAATGATCGCCTGCTCGTTGTGCTGGCGCTAGCCACCGTGCTGGTGATGGCGATTATCATCAATGA
CGTTGATTGTGTTGGTTCTG

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MPVYRYKALDVRGDLLEGQMEAASEAEVAARLQEQGHVPVEASLSNGDAIRPSLRNFLGEKPFSGLGLIHFTQQLAALLG
AGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALERQHGVFSRLYVTMARAGESGGNMPETLQRLADYLERN
QVVRAKVINALIYPVILIFVVGGALAFLLGYVVPQFGAMYESLDVALPWFTQGVLALGHFIGDWWFLLLAVICIGMIFVE
RKRRDVAFRARFDTWLLRQRLLGTLIVKLETARLARTLGTLLRNGVPLLSALRISRNVLSNAALVDDLGSVAEDVKNGLG
LAGALGRGKRFPRLAVQMIQVGEESGTLDTMLLKAASSFEQETTVMIDRLLAALVPAITLVMAMIIAVVILSVLVPLYDL
TNSIG

Sequences:

>Translated_405_residues
MPVYRYKALDVRGDLLEGQMEAASEAEVAARLQEQGHVPVEASLSNGDAIRPSLRNFLGEKPFSGLGLIHFTQQLAALLG
AGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALERQHGVFSRLYVTMARAGESGGNMPETLQRLADYLERN
QVVRAKVINALIYPVILIFVVGGALAFLLGYVVPQFGAMYESLDVALPWFTQGVLALGHFIGDWWFLLLAVICIGMIFVE
RKRRDVAFRARFDTWLLRQRLLGTLIVKLETARLARTLGTLLRNGVPLLSALRISRNVLSNAALVDDLGSVAEDVKNGLG
LAGALGRGKRFPRLAVQMIQVGEESGTLDTMLLKAASSFEQETTVMIDRLLAALVPAITLVMAMIIAVVILSVLVPLYDL
TNSIG
>Mature_404_residues
PVYRYKALDVRGDLLEGQMEAASEAEVAARLQEQGHVPVEASLSNGDAIRPSLRNFLGEKPFSGLGLIHFTQQLAALLGA
GQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALERQHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQ
VVRAKVINALIYPVILIFVVGGALAFLLGYVVPQFGAMYESLDVALPWFTQGVLALGHFIGDWWFLLLAVICIGMIFVER
KRRDVAFRARFDTWLLRQRLLGTLIVKLETARLARTLGTLLRNGVPLLSALRISRNVLSNAALVDDLGSVAEDVKNGLGL
AGALGRGKRFPRLAVQMIQVGEESGTLDTMLLKAASSFEQETTVMIDRLLAALVPAITLVMAMIIAVVILSVLVPLYDLT
NSIG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=409, Percent_Identity=33.0073349633252, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1786295, Length=406, Percent_Identity=26.8472906403941, Blast_Score=123, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44112; Mature: 43980

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVYRYKALDVRGDLLEGQMEAASEAEVAARLQEQGHVPVEASLSNGDAIRPSLRNFLGE
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCC
KPFSGLGLIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSI
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEE
ALERQHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFV
EEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGALAFLLGYVVPQFGAMYESLDVALPWFTQGVLALGHFIGDWWFLLLAVICIGMIFVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKRRDVAFRARFDTWLLRQRLLGTLIVKLETARLARTLGTLLRNGVPLLSALRISRNVLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
NAALVDDLGSVAEDVKNGLGLAGALGRGKRFPRLAVQMIQVGEESGTLDTMLLKAASSFE
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
QETTVMIDRLLAALVPAITLVMAMIIAVVILSVLVPLYDLTNSIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PVYRYKALDVRGDLLEGQMEAASEAEVAARLQEQGHVPVEASLSNGDAIRPSLRNFLGE
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCC
KPFSGLGLIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSI
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEE
ALERQHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFV
EEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGALAFLLGYVVPQFGAMYESLDVALPWFTQGVLALGHFIGDWWFLLLAVICIGMIFVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKRRDVAFRARFDTWLLRQRLLGTLIVKLETARLARTLGTLLRNGVPLLSALRISRNVLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
NAALVDDLGSVAEDVKNGLGLAGALGRGKRFPRLAVQMIQVGEESGTLDTMLLKAASSFE
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
QETTVMIDRLLAALVPAITLVMAMIIAVVILSVLVPLYDLTNSIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]