| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is rsrIR
Identifier: 197294795
GI number: 197294795
Start: 797317
End: 798045
Strand: Reverse
Name: rsrIR
Synonym: PAa_0777
Alternate gene names: NA
Gene position: 798045-797317 (Counterclockwise)
Preceding gene: 197294796
Following gene: 197294793
Centisome position: 90.69
GC content: 26.75
Gene sequence:
>729_bases ATGTCTAATTCAGAACAATTAAGAAAAAACATTAAACAACACAAACCTAAAAATAATAAATCTAAAAAAGATGATAAATT AATTTATGCCGCCATGATAGATGTTAAAAATTATTTGGAATGGCGTTTTAAAGACTTTTTGGCTAACAACCCTTTTTATA TTATCCATGAAAAACAATTATCCATTGGTTTTATGAAGGATATTATTTATAAAAAAGGTATTAGAAAAATAACTGATTAT GAAGAGGATAAAATTTTTGATAATCGCACTATTAAACCAGATGGGGGAGTTTTGCTTTTGAAATCATATTCAGATAATGA TTTTTGTAAGGTTTTATTGGTTTCAGAAGTGAAAAGACAAGGAACTAATGATAAATTACAAGAAGAAGGAAAACCTAAAC AATCAAGAGGAAATGCAGTTGAAAGGTTAGGAAAAAATTTAACTGCAATTAAATCTATGTTCATGCATGAACTTATTACT CCATTTGTTTGTTTTGGTTGGGGTTGTGATTTCAATCATGAAGATACTTTTGTTGATGCTAAAATATTTGTTTTAAACGA ATTTTTTAAATTAAATAAGACATTTGTTTTTAAAAAATATGGAGATAATGGACATAATCGTTTTTCACCAGTTTCTATGT ATTTTCGTGAAAATCCTTGGACACGGGAAGAAATGTTTGATTTATTAAAAGAAGTAGCCGAAACCGCTTTTAGATATTAC TTTTTTTAG
Upstream 100 bases:
>100_bases AAAGACGTTTTTGAAAACGTTGTTTTTCATTCAGAAATTTTAATTTTTAATGTTAATAATTTAAAACCGCATTATTTTTG TAGAGGAACAATGATTTAAA
Downstream 100 bases:
>100_bases GTTTTTTTTAGGTATTATAATCAATAATGAGTTTTTATAATTTTACAAAAATTTTATAAAAAATATTTCATAGCGATAGA AAAAAAGACAGGCTTAAATA
Product: Putative restriction endonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MSNSEQLRKNIKQHKPKNNKSKKDDKLIYAAMIDVKNYLEWRFKDFLANNPFYIIHEKQLSIGFMKDIIYKKGIRKITDY EEDKIFDNRTIKPDGGVLLLKSYSDNDFCKVLLVSEVKRQGTNDKLQEEGKPKQSRGNAVERLGKNLTAIKSMFMHELIT PFVCFGWGCDFNHEDTFVDAKIFVLNEFFKLNKTFVFKKYGDNGHNRFSPVSMYFRENPWTREEMFDLLKEVAETAFRYY FF
Sequences:
>Translated_242_residues MSNSEQLRKNIKQHKPKNNKSKKDDKLIYAAMIDVKNYLEWRFKDFLANNPFYIIHEKQLSIGFMKDIIYKKGIRKITDY EEDKIFDNRTIKPDGGVLLLKSYSDNDFCKVLLVSEVKRQGTNDKLQEEGKPKQSRGNAVERLGKNLTAIKSMFMHELIT PFVCFGWGCDFNHEDTFVDAKIFVLNEFFKLNKTFVFKKYGDNGHNRFSPVSMYFRENPWTREEMFDLLKEVAETAFRYY FF >Mature_241_residues SNSEQLRKNIKQHKPKNNKSKKDDKLIYAAMIDVKNYLEWRFKDFLANNPFYIIHEKQLSIGFMKDIIYKKGIRKITDYE EDKIFDNRTIKPDGGVLLLKSYSDNDFCKVLLVSEVKRQGTNDKLQEEGKPKQSRGNAVERLGKNLTAIKSMFMHELITP FVCFGWGCDFNHEDTFVDAKIFVLNEFFKLNKTFVFKKYGDNGHNRFSPVSMYFRENPWTREEMFDLLKEVAETAFRYYF F
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28750; Mature: 28619
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSEQLRKNIKQHKPKNNKSKKDDKLIYAAMIDVKNYLEWRFKDFLANNPFYIIHEKQL CCCHHHHHHHHHHCCCCCCCCCCHHHEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC SIGFMKDIIYKKGIRKITDYEEDKIFDNRTIKPDGGVLLLKSYSDNDFCKVLLVSEVKRQ HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHC GTNDKLQEEGKPKQSRGNAVERLGKNLTAIKSMFMHELITPFVCFGWGCDFNHEDTFVDA CCCCHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHH KIFVLNEFFKLNKTFVFKKYGDNGHNRFSPVSMYFRENPWTREEMFDLLKEVAETAFRYY HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHH FF CC >Mature Secondary Structure SNSEQLRKNIKQHKPKNNKSKKDDKLIYAAMIDVKNYLEWRFKDFLANNPFYIIHEKQL CCHHHHHHHHHHCCCCCCCCCCHHHEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC SIGFMKDIIYKKGIRKITDYEEDKIFDNRTIKPDGGVLLLKSYSDNDFCKVLLVSEVKRQ HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHC GTNDKLQEEGKPKQSRGNAVERLGKNLTAIKSMFMHELITPFVCFGWGCDFNHEDTFVDA CCCCHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHH KIFVLNEFFKLNKTFVFKKYGDNGHNRFSPVSMYFRENPWTREEMFDLLKEVAETAFRYY HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHH FF CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA