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The map label for this gene is fliA

Identifier: 197294755

GI number: 197294755

Start: 739459

End: 740133

Strand: Direct

Name: fliA

Synonym: PAa_0723

Alternate gene names: NA

Gene position: 739459-740133 (Clockwise)

Preceding gene: 197294750

Following gene: 197294756

Centisome position: 84.03

GC content: 31.7

Gene sequence:

>675_bases
ATGCCGACAGATGAAAATAGAAAAAAAGAATTATTTCAAGAATTTTTAAAAAATAAAAAAAATTTGCAAATCAGAAATCA
ACTTGTAGAACTTTATTACCCACTAGTTAATAAAATAGTTAGTAAGTTCAAATACTTCCCCTCAATACTTCAAAGACGAG
ATTTATTTCAAGAAGGCGTTTTAGGTTTAATCAATGCCCTCGAAGGGTATGATTTTCAAGTAGACATTGACCAGTTTATT
GGATACGCTATCGAACACATTAAATTTGCGATTCACGAACTTATCCGCAAATGTCAATCAGCTTCAATGCCTCAAAAACA
CAAAAAAATAATAACTAAAATTTGTTTCGAAGAATGGGAAGAAGCAACACAACCCAAATGGAGCAAAATCCTTACGCCTC
ATCAACTATGGCTTAAACAAGCACATCACGATATTTTCTTACAAATATTAACTAAAAATTTAACGGATAAACAATTTGAC
GTTATCAGTTGGACCTTCGGGGTTTCCCCGAAAGACGTTGAAGACAACGATAAAGTTATTCGTTCCAACAAACAAATCGC
GGAAGAATTAGAAAACAAATACAACCAAAAATTTTCTTTAAATCGCGTGGCAGTTATCAAAATTAGAGCCATCGCTAAAT
TACAAAAAATATTCAAAAAAGGAGAAAATAACTAA

Upstream 100 bases:

>100_bases
AGACTGACTTATTTTTAGTCGGTCTTTTTTTGTACCCAAAACTAAAAAATAATAATTTTTCTATCTTTTCTAAAAAAACG
TTTTTTTAGAAAGGAGAACA

Downstream 100 bases:

>100_bases
TGTTAAATAGAACCCAATTAATCGGCCGTCTAACAAGCGACCCAAAAAAAGAATTTTTAAACAGCAAAGGAGAACGAATT
GCTAAAGTTGATTTTGACTT

Product: DNA-directed RNA polymerase specialized sigma subunit

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; DNA-Directed RNA Polymerase Sigma Subunit

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MPTDENRKKELFQEFLKNKKNLQIRNQLVELYYPLVNKIVSKFKYFPSILQRRDLFQEGVLGLINALEGYDFQVDIDQFI
GYAIEHIKFAIHELIRKCQSASMPQKHKKIITKICFEEWEEATQPKWSKILTPHQLWLKQAHHDIFLQILTKNLTDKQFD
VISWTFGVSPKDVEDNDKVIRSNKQIAEELENKYNQKFSLNRVAVIKIRAIAKLQKIFKKGENN

Sequences:

>Translated_224_residues
MPTDENRKKELFQEFLKNKKNLQIRNQLVELYYPLVNKIVSKFKYFPSILQRRDLFQEGVLGLINALEGYDFQVDIDQFI
GYAIEHIKFAIHELIRKCQSASMPQKHKKIITKICFEEWEEATQPKWSKILTPHQLWLKQAHHDIFLQILTKNLTDKQFD
VISWTFGVSPKDVEDNDKVIRSNKQIAEELENKYNQKFSLNRVAVIKIRAIAKLQKIFKKGENN
>Mature_223_residues
PTDENRKKELFQEFLKNKKNLQIRNQLVELYYPLVNKIVSKFKYFPSILQRRDLFQEGVLGLINALEGYDFQVDIDQFIG
YAIEHIKFAIHELIRKCQSASMPQKHKKIITKICFEEWEEATQPKWSKILTPHQLWLKQAHHDIFLQILTKNLTDKQFDV
ISWTFGVSPKDVEDNDKVIRSNKQIAEELENKYNQKFSLNRVAVIKIRAIAKLQKIFKKGENN

Specific function: Unknown

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26591; Mature: 26460

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS00715 SIGMA70_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTDENRKKELFQEFLKNKKNLQIRNQLVELYYPLVNKIVSKFKYFPSILQRRDLFQEGV
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLINALEGYDFQVDIDQFIGYAIEHIKFAIHELIRKCQSASMPQKHKKIITKICFEEWE
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
EATQPKWSKILTPHQLWLKQAHHDIFLQILTKNLTDKQFDVISWTFGVSPKDVEDNDKVI
HHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEECCCCCCCCCCHHHH
RSNKQIAEELENKYNQKFSLNRVAVIKIRAIAKLQKIFKKGENN
HCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PTDENRKKELFQEFLKNKKNLQIRNQLVELYYPLVNKIVSKFKYFPSILQRRDLFQEGV
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLINALEGYDFQVDIDQFIGYAIEHIKFAIHELIRKCQSASMPQKHKKIITKICFEEWE
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
EATQPKWSKILTPHQLWLKQAHHDIFLQILTKNLTDKQFDVISWTFGVSPKDVEDNDKVI
HHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEECCCCCCCCCCHHHH
RSNKQIAEELENKYNQKFSLNRVAVIKIRAIAKLQKIFKKGENN
HCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA