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The map label for this gene is cbf1 [H]

Identifier: 197294744

GI number: 197294744

Start: 728697

End: 729647

Strand: Reverse

Name: cbf1 [H]

Synonym: PAa_0710

Alternate gene names: 197294744

Gene position: 729647-728697 (Counterclockwise)

Preceding gene: 197294745

Following gene: 197294742

Centisome position: 82.92

GC content: 27.55

Gene sequence:

>951_bases
ATGACAAACAATAATATTATTATAAAACAAAAAGATCAAATAAATCATTTAGTAGGAAAAGTAACGAGTATTAATCAAGG
AAATCATTTTTATAATGTCAATTTGCAATTAACTAATAAAACGGATATTAATGTTAAATTAGACAAAGAAACACCAAGCC
CTGTACAAGGAAAAATATACTGTTTTCAAACTATTTGCCTTTTGGATAAAGAGGAGTTGGTTTTGGTGAATCAAAAATTT
AGTTTGGCGCAAGAAGTGCTTGATGCCCAAACTTTATATGATGTTTTTTTAGCTTTTTTTGTCTGCTCTCCTGTTTCATT
TGCAGTGATTGAACGAGAATTAGAAAAATATCTTGCTCAAATAAAAAACAAAATCATCAAAAAGATAACAACTAATTTAT
ATTTTAAAAATAAAAAAGACTTTTTGATTGCCACAGCAGCTTTGAAAATGCATCATAATTATTACGGCGGATTGGGTTAT
CACACTTGGAATATGTTAAAAATGGCAGAATCTCTTCTTAACATTTATCCTTTTTTAAACCGCGATTTGTTGTATGCAGG
AATTATTTTGCATGATATGGCAAAAATTCAAGAAATTGATGCAGATAAAAAGAATTATACAAAAGAAGGGAAATTATTGG
GTCATTTATTGATGATTACTTTTGAGGTGGAAAAAGAAGCTAATTTATTAGGTTTCCAAAATACAGAAGAAATTTTACTT
CTCAAACACATTCTTATTTCTAATCATGGACTTTTAGAATATGAAGCTGCTAAAAACCCTCAAATAGCAGAAACTCTTTT
AATTTGGTATTTGGATAATATTGATGCAAAATTAACTGTTTTGCAAGAAACCTTGGAAAAAACTGAGAACCAGACTTTTA
CAACTCCAATTTCTATTTTAGAAAAAAGAAACTTTTATAAGTTTTTTTTAGATCCTAAAAATGATGAATAA

Upstream 100 bases:

>100_bases
ATAACTAACGAATTAGAAGAATTAAAAGCATTTGTTTTCAATCACAAACATAATGAAAAAGTGGATGCTTGGCATAAAAA
AGAAAAAAAGAGAAAAAAAT

Downstream 100 bases:

>100_bases
AACATATTTTTTGAATATACAATTAATTACAACAAAAATATTGATGTAAAAACTAACTAACTTTTGAAAAAATAAAAAAC
CTTCCACAACTTTTTTGCAA

Product: Cmp binding factor 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MTNNNIIIKQKDQINHLVGKVTSINQGNHFYNVNLQLTNKTDINVKLDKETPSPVQGKIYCFQTICLLDKEELVLVNQKF
SLAQEVLDAQTLYDVFLAFFVCSPVSFAVIERELEKYLAQIKNKIIKKITTNLYFKNKKDFLIATAALKMHHNYYGGLGY
HTWNMLKMAESLLNIYPFLNRDLLYAGIILHDMAKIQEIDADKKNYTKEGKLLGHLLMITFEVEKEANLLGFQNTEEILL
LKHILISNHGLLEYEAAKNPQIAETLLIWYLDNIDAKLTVLQETLEKTENQTFTTPISILEKRNFYKFFLDPKNDE

Sequences:

>Translated_316_residues
MTNNNIIIKQKDQINHLVGKVTSINQGNHFYNVNLQLTNKTDINVKLDKETPSPVQGKIYCFQTICLLDKEELVLVNQKF
SLAQEVLDAQTLYDVFLAFFVCSPVSFAVIERELEKYLAQIKNKIIKKITTNLYFKNKKDFLIATAALKMHHNYYGGLGY
HTWNMLKMAESLLNIYPFLNRDLLYAGIILHDMAKIQEIDADKKNYTKEGKLLGHLLMITFEVEKEANLLGFQNTEEILL
LKHILISNHGLLEYEAAKNPQIAETLLIWYLDNIDAKLTVLQETLEKTENQTFTTPISILEKRNFYKFFLDPKNDE
>Mature_315_residues
TNNNIIIKQKDQINHLVGKVTSINQGNHFYNVNLQLTNKTDINVKLDKETPSPVQGKIYCFQTICLLDKEELVLVNQKFS
LAQEVLDAQTLYDVFLAFFVCSPVSFAVIERELEKYLAQIKNKIIKKITTNLYFKNKKDFLIATAALKMHHNYYGGLGYH
TWNMLKMAESLLNIYPFLNRDLLYAGIILHDMAKIQEIDADKKNYTKEGKLLGHLLMITFEVEKEANLLGFQNTEEILLL
KHILISNHGLLEYEAAKNPQIAETLLIWYLDNIDAKLTVLQETLEKTENQTFTTPISILEKRNFYKFFLDPKNDE

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 36614; Mature: 36483

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNNNIIIKQKDQINHLVGKVTSINQGNHFYNVNLQLTNKTDINVKLDKETPSPVQGKIY
CCCCCEEEEEHHHHHHHHHHHHEECCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCEEE
CFQTICLLDKEELVLVNQKFSLAQEVLDAQTLYDVFLAFFVCSPVSFAVIERELEKYLAQ
EEEEEEHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IKNKIIKKITTNLYFKNKKDFLIATAALKMHHNYYGGLGYHTWNMLKMAESLLNIYPFLN
HHHHHHHHHHHHHEEECCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
RDLLYAGIILHDMAKIQEIDADKKNYTKEGKLLGHLLMITFEVEKEANLLGFQNTEEILL
CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCCCHHHHH
LKHILISNHGLLEYEAAKNPQIAETLLIWYLDNIDAKLTVLQETLEKTENQTFTTPISIL
HHHHHHCCCCCEEEECCCCCCHHHHEEEHEECCCCHHHHHHHHHHHHHCCCEEECHHHHH
EKRNFYKFFLDPKNDE
HCCCCEEEEECCCCCC
>Mature Secondary Structure 
TNNNIIIKQKDQINHLVGKVTSINQGNHFYNVNLQLTNKTDINVKLDKETPSPVQGKIY
CCCCEEEEEHHHHHHHHHHHHEECCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCEEE
CFQTICLLDKEELVLVNQKFSLAQEVLDAQTLYDVFLAFFVCSPVSFAVIERELEKYLAQ
EEEEEEHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IKNKIIKKITTNLYFKNKKDFLIATAALKMHHNYYGGLGYHTWNMLKMAESLLNIYPFLN
HHHHHHHHHHHHHEEECCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
RDLLYAGIILHDMAKIQEIDADKKNYTKEGKLLGHLLMITFEVEKEANLLGFQNTEEILL
CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCCCHHHHH
LKHILISNHGLLEYEAAKNPQIAETLLIWYLDNIDAKLTVLQETLEKTENQTFTTPISIL
HHHHHHCCCCCEEEECCCCCCHHHHEEEHEECCCCHHHHHHHHHHHHHCCCEEECHHHHH
EKRNFYKFFLDPKNDE
HCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA