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The map label for this gene is rnhC [H]

Identifier: 197294741

GI number: 197294741

Start: 725645

End: 726550

Strand: Reverse

Name: rnhC [H]

Synonym: PAa_0707

Alternate gene names: 197294741

Gene position: 726550-725645 (Counterclockwise)

Preceding gene: 197294742

Following gene: 197294739

Centisome position: 82.57

GC content: 26.27

Gene sequence:

>906_bases
ATGTCACATTTCACTTTAAAATTAAATTCAGACCAGTTTATGGTAATTCAAAAATATTACCAAAAAGAGTTGCAAACGCA
AAGCAATTCCAAAACTATTGCTTTTTTTGTCAAAAGCGATAAAAATATGATAACTGTTTATCGCAACGGCACTTTATTGG
TTCAAGGTTCAGATGCTTTTTCTAAAATTCTTTTTTTGCAAAAATTATTACAAACAAAGCCATTAAATGAAAAAAAAAAC
ACAAAATCTTATTATTTAGAATCGATTGGCTCTGATGAAGTAGGAACTGGAGATGTTTTTGGCCCTATTATAGTTTGTTC
TGTTTATATTCCTCCTCAAAACATTACTTTTTTCCAAAAAAAAATTTTTCTTTCTGAATCAAAACAAATGTTAGATAAAA
ACATTATCCAAACTGTTCCTTTAATTATGGATAAAGTTATTAAAACGATTGTCACATTAAAACCAAGCAAATACAATAAA
TTGATTGTCAACAACAATTTAAACAAAATTAAAGCTTTAATGCATAATTTATCTATTCTTCAAACTGTTGAAAAAATTAA
CAAAGCCGTGCCTGTTATTTTAGATCAATTTTGTTTACCCAAATTATATTTTAATTATTTAAAAGATGAAACATCTGTTT
ATCAAAAAATCAATTTTCAAACAAAAGCAGACAGCAATTATTTAAGCGTTGCTGTTGCATCTCTTATTGCTAGATATTAT
TTTTTGAAAAAAATGAATCAATTAAACCATCAATTAGATTGCAAATTATACTTAGGGGCAGGCGAAAGGGTGGATCGGCA
AATTGCTTCAATTGTCGAAAAACACGGAAATTCAATTTTAAAAAACATTGCCAAATGCAATTTTAAAAATATTACCCATA
AATTTCAAAAATATTTAACAAAATAA

Upstream 100 bases:

>100_bases
AAAGAAACGCTATATTTTTAAAACTCCAATCTTTATTTTTAAATTTTTTATAATTTTTCGGATTCCAAAAATAATTAATT
AAAAGGATTAAGAAAAAGAA

Downstream 100 bases:

>100_bases
ATATCATTTTGAAAAGTTTTTATTTTATTGCTATTAAATTTTGTGATGCATATGTTTTTTTCATCTTCGCTGCAAAATTA
ACTGTTTTGCGAGAAATATT

Product: Ribonuclease HII family protein

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSHFTLKLNSDQFMVIQKYYQKELQTQSNSKTIAFFVKSDKNMITVYRNGTLLVQGSDAFSKILFLQKLLQTKPLNEKKN
TKSYYLESIGSDEVGTGDVFGPIIVCSVYIPPQNITFFQKKIFLSESKQMLDKNIIQTVPLIMDKVIKTIVTLKPSKYNK
LIVNNNLNKIKALMHNLSILQTVEKINKAVPVILDQFCLPKLYFNYLKDETSVYQKINFQTKADSNYLSVAVASLIARYY
FLKKMNQLNHQLDCKLYLGAGERVDRQIASIVEKHGNSILKNIAKCNFKNITHKFQKYLTK

Sequences:

>Translated_301_residues
MSHFTLKLNSDQFMVIQKYYQKELQTQSNSKTIAFFVKSDKNMITVYRNGTLLVQGSDAFSKILFLQKLLQTKPLNEKKN
TKSYYLESIGSDEVGTGDVFGPIIVCSVYIPPQNITFFQKKIFLSESKQMLDKNIIQTVPLIMDKVIKTIVTLKPSKYNK
LIVNNNLNKIKALMHNLSILQTVEKINKAVPVILDQFCLPKLYFNYLKDETSVYQKINFQTKADSNYLSVAVASLIARYY
FLKKMNQLNHQLDCKLYLGAGERVDRQIASIVEKHGNSILKNIAKCNFKNITHKFQKYLTK
>Mature_300_residues
SHFTLKLNSDQFMVIQKYYQKELQTQSNSKTIAFFVKSDKNMITVYRNGTLLVQGSDAFSKILFLQKLLQTKPLNEKKNT
KSYYLESIGSDEVGTGDVFGPIIVCSVYIPPQNITFFQKKIFLSESKQMLDKNIIQTVPLIMDKVIKTIVTLKPSKYNKL
IVNNNLNKIKALMHNLSILQTVEKINKAVPVILDQFCLPKLYFNYLKDETSVYQKINFQTKADSNYLSVAVASLIARYYF
LKKMNQLNHQLDCKLYLGAGERVDRQIASIVEKHGNSILKNIAKCNFKNITHKFQKYLTK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 34697; Mature: 34566

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHFTLKLNSDQFMVIQKYYQKELQTQSNSKTIAFFVKSDKNMITVYRNGTLLVQGSDAF
CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCEEEEECCHHH
SKILFLQKLLQTKPLNEKKNTKSYYLESIGSDEVGTGDVFGPIIVCSVYIPPQNITFFQK
HHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHCEEEEEEEECCCCCHHHHH
KIFLSESKQMLDKNIIQTVPLIMDKVIKTIVTLKPSKYNKLIVNNNLNKIKALMHNLSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHH
QTVEKINKAVPVILDQFCLPKLYFNYLKDETSVYQKINFQTKADSNYLSVAVASLIARYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHH
FLKKMNQLNHQLDCKLYLGAGERVDRQIASIVEKHGNSILKNIAKCNFKNITHKFQKYLT
HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHC
K
C
>Mature Secondary Structure 
SHFTLKLNSDQFMVIQKYYQKELQTQSNSKTIAFFVKSDKNMITVYRNGTLLVQGSDAF
CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCEEEEECCHHH
SKILFLQKLLQTKPLNEKKNTKSYYLESIGSDEVGTGDVFGPIIVCSVYIPPQNITFFQK
HHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHCEEEEEEEECCCCCHHHHH
KIFLSESKQMLDKNIIQTVPLIMDKVIKTIVTLKPSKYNKLIVNNNLNKIKALMHNLSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHH
QTVEKINKAVPVILDQFCLPKLYFNYLKDETSVYQKINFQTKADSNYLSVAVASLIARYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHH
FLKKMNQLNHQLDCKLYLGAGERVDRQIASIVEKHGNSILKNIAKCNFKNITHKFQKYLT
HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA