| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
Click here to switch to the map view.
The map label for this gene is 197294692
Identifier: 197294692
GI number: 197294692
Start: 652402
End: 652881
Strand: Direct
Name: 197294692
Synonym: PAa_0653
Alternate gene names: NA
Gene position: 652402-652881 (Clockwise)
Preceding gene: 197294691
Following gene: 197294693
Centisome position: 74.14
GC content: 38.54
Gene sequence:
>480_bases ATGACTACAAACAAACCAACAAACACACAGAGAAGGTTAATACAATCCAAATACATCAGGCAAGAGATTGAACGCCGCAA CGACGGAGCAATTGAATACATCTGTGAATACAACCGAAAAACAGGAAAACGCGTTGGGATTATTGAATTCTACCCCGATG GAAAAAACATCCGCATCGTCTACGAAATAAACCCAACCACAGACAACATAACCAAATCATTTATTTACAACCTTTCCGAC CAACGTTTGCTTTACATCCGCGAATACGACCAATATGGATGCAAATTTAGAACAACCTACTACAACAACGACGACCAAAC TGTTAACTTTATTGAAAACATCTTCTCAGAAACAGGAAAAATAACTAGACACACCCCAAAGGAAGGAATAACCCCCCCCC TAACTATCAACGCCTCAGCAAATAACCAACAAAACCACAAAAAAGGAGAACAAAATGAAACCAACAAAAATCCAAAATAA
Upstream 100 bases:
>100_bases AACATTTCAATTTCTACCAAAAACCGCAAATCACACCTAAAAAAAACACACAACACGCTCGGCACCAACCCACAAAAATA AAAACAAAGGAGAACAAAAT
Downstream 100 bases:
>100_bases CACTTCAACAAACAAAATCAATCTACCTGATACAACTGATTCTTTTTCATCAATCATTTTAGGCGATGTTTGTGAATCTT TAAACCAACTTCAAAATATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MTTNKPTNTQRRLIQSKYIRQEIERRNDGAIEYICEYNRKTGKRVGIIEFYPDGKNIRIVYEINPTTDNITKSFIYNLSD QRLLYIREYDQYGCKFRTTYYNNDDQTVNFIENIFSETGKITRHTPKEGITPPLTINASANNQQNHKKGEQNETNKNPK
Sequences:
>Translated_159_residues MTTNKPTNTQRRLIQSKYIRQEIERRNDGAIEYICEYNRKTGKRVGIIEFYPDGKNIRIVYEINPTTDNITKSFIYNLSD QRLLYIREYDQYGCKFRTTYYNNDDQTVNFIENIFSETGKITRHTPKEGITPPLTINASANNQQNHKKGEQNETNKNPK >Mature_158_residues TTNKPTNTQRRLIQSKYIRQEIERRNDGAIEYICEYNRKTGKRVGIIEFYPDGKNIRIVYEINPTTDNITKSFIYNLSDQ RLLYIREYDQYGCKFRTTYYNNDDQTVNFIENIFSETGKITRHTPKEGITPPLTINASANNQQNHKKGEQNETNKNPK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18781; Mature: 18650
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNKPTNTQRRLIQSKYIRQEIERRNDGAIEYICEYNRKTGKRVGIIEFYPDGKNIRIV CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEE YEINPTTDNITKSFIYNLSDQRLLYIREYDQYGCKFRTTYYNNDDQTVNFIENIFSETGK EEECCCCHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHCCC ITRHTPKEGITPPLTINASANNQQNHKKGEQNETNKNPK EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TTNKPTNTQRRLIQSKYIRQEIERRNDGAIEYICEYNRKTGKRVGIIEFYPDGKNIRIV CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEE YEINPTTDNITKSFIYNLSDQRLLYIREYDQYGCKFRTTYYNNDDQTVNFIENIFSETGK EEECCCCHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHCCC ITRHTPKEGITPPLTINASANNQQNHKKGEQNETNKNPK EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA