| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is 197294596
Identifier: 197294596
GI number: 197294596
Start: 560507
End: 562123
Strand: Reverse
Name: 197294596
Synonym: PAa_0552
Alternate gene names: NA
Gene position: 562123-560507 (Counterclockwise)
Preceding gene: 197294598
Following gene: 197294595
Centisome position: 63.88
GC content: 28.82
Gene sequence:
>1617_bases ATGAATCTAAAATCTTTTATTGCCTATCTTTTGATGGTTTTAATAACTTTATTGTTTCTCTTAATTTTTCATCTTTGCCC TTGGGAAATCCAAAACAAAGAACTAATTAGTAAAAACCGTAAATTGATGCAAGAAGAAAAAAATATTCCTATTGGCCAAA AGTTAGACAATCCAATTGAAGCCTCTTCTTTACAACACTTTTCTGAAAAAACTCCAGATTTAGACGCTTTACAAGAAATA ACAAGAGAAGCAAAAGAATTAATAAAAAAAGGCTTGAGTGCTTTAGAACTTAAACAAAAAGGCTATACTGCAAACATTTT AAAAAAAGCACATTTTTCCGCACAAAAATTAAAACAATTAGGATACAAAGCCAGAGATTTAAAAACGGCACAATTCAAAA TTAAAGCTTTGAAAACTGCTGGTTTTTTACCAGAAGAATTGCTTCAAGCAGGGTTTTTGCCTCAAGATTTAAAAAAAGCC GGTTATTTGCCGCATGAACTGATAAATCTTAATAACGATATTTTTCAACAAATAGGATACAAAGCAAAAGATTTCAAAAG AGATTTTATTAGTTTAGAACAATTAGAAAAAAAAGGATATACCATTTTTAATTTAATTCAAGTTGGTTATAGTCCTTTAG AATTATCATTTAGATACACAATTAACAAAATCAAACTAGAAGCATGTTATAATCTTTTGCAATTAAAAAAAGCCGGTTTT AGTGCTAAAGAATTAATTCTTTATCTTGGAGCAACTCCTCAAGAATTAAAAGATGCTTCTTTTTCTGCAGTACAATTGAG ATATACAGGACTATCTCTTTATGGCTTTAAGTCAATTGGTTATACTCCCGAAGAACTAAAAAAAGCCGGTTTTAGTGCTA AAGATTTAAAAGAAATGGGATACCCTTTGCAAGAGCTAATTCCTCCCTTATATTCTTTAAAACAGTTGTTACAAGAAGCC CATTTTAGTTTAGAAGAATTCAAAGAATTAGGAATTCCTGCTCAAGTTTTAAATCAAAATGGCGTCCCGATTTCACAATT AAAAGAAGCTGGTTATTTAATAGAGGAACTTAAAGGTTTTAAATTTAGCGTTCAAGAACTAAAAGATGTGGGCTATACTC TTGAAGAATTAAAAGAAAAAGGTTTTTCTTTGGAACAATTTTTATTCGCAGGAATCAAACTGCAAAATTTAAAAACCATT TATACTCTGGAAGAATTGAGAAATGCAGGCAGCAACATCAAAGAACTCCAAAAAGGCGGCTATACTCTTGAAGAATTAAT CCAATTGCCTAATGTTGGTTTAGAATTAAGAGATCTTAAAATCACTCTTAAACAATGTTTAGAGCTTAATTGTTCCTCTA GGTTAATTAAAGAATTTGGCTATTCCAAGGAAGAATTAAAAAGATTAGGTTTTTTAGTAAATTTTTTTCCCAATGGTTTG ATCAAAAGTATTACTCAAATTAATCTTCAAACTGGTAAAAAAATGAGAACCAATTTTTTTGATCATTCTTTAGAAACTTG TTTAATTAACCTTTATGATTCTTTAGGTAGACTTTGTAAAACTTATAAACCTACCGCAAAAAAATTAAAAAAAGAATTAA ACTTAACTATATTTTAA
Upstream 100 bases:
>100_bases TTGTTATTTAATGATTAGTTTTTTTGAAAAACTAATTAAAAACCAAAAGAACAAAAAAATTCATATTATATGAATTATAA AGTAATTAGAAATTTTTAAA
Downstream 100 bases:
>100_bases AATAAGTTTCCTTTTTTTCTTAAAAAAAGGTATAATGTTATTGATGTTTATTTTTTTAATCTTCTGTTTTTGATGATATG ATAATATTCAAATTTATGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 538; Mature: 538
Protein sequence:
>538_residues MNLKSFIAYLLMVLITLLFLLIFHLCPWEIQNKELISKNRKLMQEEKNIPIGQKLDNPIEASSLQHFSEKTPDLDALQEI TREAKELIKKGLSALELKQKGYTANILKKAHFSAQKLKQLGYKARDLKTAQFKIKALKTAGFLPEELLQAGFLPQDLKKA GYLPHELINLNNDIFQQIGYKAKDFKRDFISLEQLEKKGYTIFNLIQVGYSPLELSFRYTINKIKLEACYNLLQLKKAGF SAKELILYLGATPQELKDASFSAVQLRYTGLSLYGFKSIGYTPEELKKAGFSAKDLKEMGYPLQELIPPLYSLKQLLQEA HFSLEEFKELGIPAQVLNQNGVPISQLKEAGYLIEELKGFKFSVQELKDVGYTLEELKEKGFSLEQFLFAGIKLQNLKTI YTLEELRNAGSNIKELQKGGYTLEELIQLPNVGLELRDLKITLKQCLELNCSSRLIKEFGYSKEELKRLGFLVNFFPNGL IKSITQINLQTGKKMRTNFFDHSLETCLINLYDSLGRLCKTYKPTAKKLKKELNLTIF
Sequences:
>Translated_538_residues MNLKSFIAYLLMVLITLLFLLIFHLCPWEIQNKELISKNRKLMQEEKNIPIGQKLDNPIEASSLQHFSEKTPDLDALQEI TREAKELIKKGLSALELKQKGYTANILKKAHFSAQKLKQLGYKARDLKTAQFKIKALKTAGFLPEELLQAGFLPQDLKKA GYLPHELINLNNDIFQQIGYKAKDFKRDFISLEQLEKKGYTIFNLIQVGYSPLELSFRYTINKIKLEACYNLLQLKKAGF SAKELILYLGATPQELKDASFSAVQLRYTGLSLYGFKSIGYTPEELKKAGFSAKDLKEMGYPLQELIPPLYSLKQLLQEA HFSLEEFKELGIPAQVLNQNGVPISQLKEAGYLIEELKGFKFSVQELKDVGYTLEELKEKGFSLEQFLFAGIKLQNLKTI YTLEELRNAGSNIKELQKGGYTLEELIQLPNVGLELRDLKITLKQCLELNCSSRLIKEFGYSKEELKRLGFLVNFFPNGL IKSITQINLQTGKKMRTNFFDHSLETCLINLYDSLGRLCKTYKPTAKKLKKELNLTIF >Mature_538_residues MNLKSFIAYLLMVLITLLFLLIFHLCPWEIQNKELISKNRKLMQEEKNIPIGQKLDNPIEASSLQHFSEKTPDLDALQEI TREAKELIKKGLSALELKQKGYTANILKKAHFSAQKLKQLGYKARDLKTAQFKIKALKTAGFLPEELLQAGFLPQDLKKA GYLPHELINLNNDIFQQIGYKAKDFKRDFISLEQLEKKGYTIFNLIQVGYSPLELSFRYTINKIKLEACYNLLQLKKAGF SAKELILYLGATPQELKDASFSAVQLRYTGLSLYGFKSIGYTPEELKKAGFSAKDLKEMGYPLQELIPPLYSLKQLLQEA HFSLEEFKELGIPAQVLNQNGVPISQLKEAGYLIEELKGFKFSVQELKDVGYTLEELKEKGFSLEQFLFAGIKLQNLKTI YTLEELRNAGSNIKELQKGGYTLEELIQLPNVGLELRDLKITLKQCLELNCSSRLIKEFGYSKEELKRLGFLVNFFPNGL IKSITQINLQTGKKMRTNFFDHSLETCLINLYDSLGRLCKTYKPTAKKLKKELNLTIF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61578; Mature: 61578
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLKSFIAYLLMVLITLLFLLIFHLCPWEIQNKELISKNRKLMQEEKNIPIGQKLDNPIE CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH ASSLQHFSEKTPDLDALQEITREAKELIKKGLSALELKQKGYTANILKKAHFSAQKLKQL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC GYKARDLKTAQFKIKALKTAGFLPEELLQAGFLPQDLKKAGYLPHELINLNNDIFQQIGY CCHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHCCCCCHHHHCCCHHHHHHCCC KAKDFKRDFISLEQLEKKGYTIFNLIQVGYSPLELSFRYTINKIKLEACYNLLQLKKAGF CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCC SAKELILYLGATPQELKDASFSAVQLRYTGLSLYGFKSIGYTPEELKKAGFSAKDLKEMG CHHHHHHHCCCCHHHHHCCCCCEEEEEEECEEEEECHHCCCCHHHHHHCCCCHHHHHHHC YPLQELIPPLYSLKQLLQEAHFSLEEFKELGIPAQVLNQNGVPISQLKEAGYLIEELKGF CCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC KFSVQELKDVGYTLEELKEKGFSLEQFLFAGIKLQNLKTIYTLEELRNAGSNIKELQKGG HHHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHCC YTLEELIQLPNVGLELRDLKITLKQCLELNCSSRLIKEFGYSKEELKRLGFLVNFFPNGL CCHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHH IKSITQINLQTGKKMRTNFFDHSLETCLINLYDSLGRLCKTYKPTAKKLKKELNLTIF HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC >Mature Secondary Structure MNLKSFIAYLLMVLITLLFLLIFHLCPWEIQNKELISKNRKLMQEEKNIPIGQKLDNPIE CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH ASSLQHFSEKTPDLDALQEITREAKELIKKGLSALELKQKGYTANILKKAHFSAQKLKQL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC GYKARDLKTAQFKIKALKTAGFLPEELLQAGFLPQDLKKAGYLPHELINLNNDIFQQIGY CCHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHCCCCCHHHHCCCHHHHHHCCC KAKDFKRDFISLEQLEKKGYTIFNLIQVGYSPLELSFRYTINKIKLEACYNLLQLKKAGF CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCC SAKELILYLGATPQELKDASFSAVQLRYTGLSLYGFKSIGYTPEELKKAGFSAKDLKEMG CHHHHHHHCCCCHHHHHCCCCCEEEEEEECEEEEECHHCCCCHHHHHHCCCCHHHHHHHC YPLQELIPPLYSLKQLLQEAHFSLEEFKELGIPAQVLNQNGVPISQLKEAGYLIEELKGF CCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC KFSVQELKDVGYTLEELKEKGFSLEQFLFAGIKLQNLKTIYTLEELRNAGSNIKELQKGG HHHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHCC YTLEELIQLPNVGLELRDLKITLKQCLELNCSSRLIKEFGYSKEELKRLGFLVNFFPNGL CCHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHH IKSITQINLQTGKKMRTNFFDHSLETCLINLYDSLGRLCKTYKPTAKKLKKELNLTIF HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA