| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is dnaE [H]
Identifier: 197294579
GI number: 197294579
Start: 532172
End: 534928
Strand: Reverse
Name: dnaE [H]
Synonym: PAa_0535
Alternate gene names: 197294579
Gene position: 534928-532172 (Counterclockwise)
Preceding gene: 197294580
Following gene: 197294578
Centisome position: 60.79
GC content: 26.22
Gene sequence:
>2757_bases ATGAGAGGTGTTTTTTATTTACAAAGCTATTATTCTTTGTTGGACAGTTTATTACCTTTAGAAAAATTAGTTTTAAAAGC TAAAGAAAATGATTATGAATTCGTTGCTTTAAGTGATGATTACAATTTATACGGAATGCCAACTTTTTTGCAATTGTGTC AAAAACACGATATAAAACCTATTTTAGGCCTTAAAATTAATTTTTTATGGAAAAACCAAACAGGTGAACTTTTGGTTTAT GCCAAAAACGATCAAGGAATAAAAAATTTAATTCAATTAGCAACTGCAAGCAAAAAAGAAGCTCAAAGCCATCTCCATCT AGAACAAATAGAAGCTTTAGGAAAAGATTTATTTATTATCATTTGCGGACTTTGTCCTTTTTGGGAAAAAATTTTTGTCA ACGACCAAAAAAATGAATTTCAAGAAGTATTAGAAAAATTAAAAACAATCTTTTCTGAAATTTTTTTAGGAATTTCTTTT CAAAGTTTTTTTTTAGAAAAATTATCCGACAATCTTATAGATTTTAGCACTCATTTTGAAATACCTTGTTTGCCTGTCAA CAAAACGAATTATGATGATGCAAAAGCCCAAGAAACTTATCAAATTTTGGCTAAAATGAAAAACAAAACAATTTATTCTG AAATAGATTTATCTTTTTTAACTAAAAGTGAGTTTGATATTAGATATCAAAAATATCCACAAATCATGGATTCTTTAAAA CAATTAATTCCTAAAATTAATTATCAAACTCCTTTGAAAAAAAATTTTTCTTTACCTTCTTACCTAGATTTTATTGAAAA AAAAGAAAAAGATTTACCTAAAGAAGTTGTTTTCGAAAAACCGGAAAAAAAACTTTTTCAAAACTTGGATGCAAAAAAAT ATTTAAAAAAAATAGTTTATCAAGGATTAGAAAAATTTTTAAATCCTTCAAAATCAAAATATGAAAAATACTCCCAAAGA ATTAACGAAGAATTAAAAATCATTAATGATTTGAATTACGAAAATTATTTTTTAATTGTAAGTGATTTAGTCAAGTACGC TAAAAAAAACAATATTTTAGTAGGTCCTGGAAGAGGTTCTTCTTCTGGTTCTTTGGTTTGTTTTTGTTTAGAAATTACAG AAATTGACCCTTTAAAATATAATCTTATTTTTGAAAGGTTTTTGAATCCTCAAAGAAAAACAATGCCAGATATTGACCTT GATTTCCCTGATAATAAAAGAGAAATAGTAATTCAGTATATTCGTCAAAAATACGGTTTACATCACGTGGCAAATATTAT TACTTTTGGAAGTTTTGCCAAAAAAAATGCCATCATTAAAGAATTATTGAAATTTAAAAAATTAATGCCTTTTCAAGAAA AACAACTTTTTCATTTTTTAGAAAACCAAAAACCAAACCAAATAACTGATGATTTAGATGACCAAATCAAGAATTTGTTA CAAATAGCATCATTTTTAGAAGGCCTACCTCGTTTTACAGGAACCCATCCTGCAGGGATTATTTTAAGCAAAGATAACTT ATTACAAAATATTCCTTTACAAAAATCAAATCACCTAAATTTATTGCAAACTCAATGGGAAGCAAAAGAATTAGAAACAA TGGGTTTGTTAAAAATAGATTTATTAGGCCTTCATAGTCTTACTATCATAGAACAAATAATTGCAGCAATTAAAGAAAGT CAAAAAGATTTTAATTTATTTTCTATTCCTTTAAATGACCCCAAAACTTATCAACTTTTGTCAAACGCAAAAACATTGGG AGTTTTTCAATTGGAATCTGGCAACGCCAAAAAGATTTTAACCCGCATGGCTCCTAACAATTTTGAAGATTTAGTTGCCT TATTAGCTTTGAATCGCCCAGGTCCCATCGATTCTTTTGATTTGTTTTTAAAAAATCGCAACCAATTCAATTCCCAAAAA ATTTATTTTGATTCGTTGATTGATCATATTTTAAAACCAACTCATGGAGTCATCCTTTATCAAGAACAAATTATGCAAAT AGCTTCCCTTTTTGCCAAATATAGCCTAGCTGAAGCAGACCTTTTTCGAAGAGCAATCAGCAAAAAAGATAAAACTGTCT TATTAAAAGAAAAAAAATATTTTCTTGAAAAAACTCAAAAAGAAGGTCACAGTCTTTCTTTATCTAATCAAATTTATGAT TATATTTTAAAATTTGCTAATTATGGTTTTAATAAAAGTCATAGTGTTGCTTATTCTTTGATTAGTTATCGTATGGCTTA TTTAAAAACTCACTATTTTATTGAATTTATGACAATTTTATTAAATGATTCTCTTAATGATCCTTTGCAAACTAAGGCTT TATTGAAGGAAGCCTTTCAAGCAGGAATTACCTTAGTCAAACCAAATATTTTTGTTAGCTCTGATCAATATTATTTCAAA AATAATCAATTATTTTTACCTTTAAGCTTAATTAAAGGAGTGAATAGTAATTTTTGTAAAGAATTAATCCAAGAGCGTCA TAAAAAAAATTTCACTTTATCTTTTAAAGAATTTAAACAAAGGTTATTTTTTTGTTTAAACGAAACTATTCTCACTAATT TAATTTTAGGTGGTGCACTTGATCAAATGGGTTTGAATCGAAAAACTTTATTTCACAATCAAGCTTTAAATGAAGTTAAA TATTATCGTTTTTTACCAAATTATCGCATTGTTGAATATGAAGAATTTTTATCACATGAATTAAAAGAAAGACAAAAAAA GGTTTTTGGTTTTAACCTTGATGATTACATAAAATAA
Upstream 100 bases:
>100_bases TTTAACCGATACTCCCAATATCCGTGATGTTATTTTATTTCCTCATTTCAAAAATAAAAACATTATTAAGAAAAAATAAA TTTAAGTAAAGGTTTTAATT
Downstream 100 bases:
>100_bases TGCATCAATAATTACGAATGATAATAAAAAAGTGTTTTTTTGGATATCGTTTATATCTTCTATAATAATAAAAAAAGATT ATCTTTTGGAAAAACCAAGA
Product: DNA polymerase III alpha subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 918; Mature: 918
Protein sequence:
>918_residues MRGVFYLQSYYSLLDSLLPLEKLVLKAKENDYEFVALSDDYNLYGMPTFLQLCQKHDIKPILGLKINFLWKNQTGELLVY AKNDQGIKNLIQLATASKKEAQSHLHLEQIEALGKDLFIIICGLCPFWEKIFVNDQKNEFQEVLEKLKTIFSEIFLGISF QSFFLEKLSDNLIDFSTHFEIPCLPVNKTNYDDAKAQETYQILAKMKNKTIYSEIDLSFLTKSEFDIRYQKYPQIMDSLK QLIPKINYQTPLKKNFSLPSYLDFIEKKEKDLPKEVVFEKPEKKLFQNLDAKKYLKKIVYQGLEKFLNPSKSKYEKYSQR INEELKIINDLNYENYFLIVSDLVKYAKKNNILVGPGRGSSSGSLVCFCLEITEIDPLKYNLIFERFLNPQRKTMPDIDL DFPDNKREIVIQYIRQKYGLHHVANIITFGSFAKKNAIIKELLKFKKLMPFQEKQLFHFLENQKPNQITDDLDDQIKNLL QIASFLEGLPRFTGTHPAGIILSKDNLLQNIPLQKSNHLNLLQTQWEAKELETMGLLKIDLLGLHSLTIIEQIIAAIKES QKDFNLFSIPLNDPKTYQLLSNAKTLGVFQLESGNAKKILTRMAPNNFEDLVALLALNRPGPIDSFDLFLKNRNQFNSQK IYFDSLIDHILKPTHGVILYQEQIMQIASLFAKYSLAEADLFRRAISKKDKTVLLKEKKYFLEKTQKEGHSLSLSNQIYD YILKFANYGFNKSHSVAYSLISYRMAYLKTHYFIEFMTILLNDSLNDPLQTKALLKEAFQAGITLVKPNIFVSSDQYYFK NNQLFLPLSLIKGVNSNFCKELIQERHKKNFTLSFKEFKQRLFFCLNETILTNLILGGALDQMGLNRKTLFHNQALNEVK YYRFLPNYRIVEYEEFLSHELKERQKKVFGFNLDDYIK
Sequences:
>Translated_918_residues MRGVFYLQSYYSLLDSLLPLEKLVLKAKENDYEFVALSDDYNLYGMPTFLQLCQKHDIKPILGLKINFLWKNQTGELLVY AKNDQGIKNLIQLATASKKEAQSHLHLEQIEALGKDLFIIICGLCPFWEKIFVNDQKNEFQEVLEKLKTIFSEIFLGISF QSFFLEKLSDNLIDFSTHFEIPCLPVNKTNYDDAKAQETYQILAKMKNKTIYSEIDLSFLTKSEFDIRYQKYPQIMDSLK QLIPKINYQTPLKKNFSLPSYLDFIEKKEKDLPKEVVFEKPEKKLFQNLDAKKYLKKIVYQGLEKFLNPSKSKYEKYSQR INEELKIINDLNYENYFLIVSDLVKYAKKNNILVGPGRGSSSGSLVCFCLEITEIDPLKYNLIFERFLNPQRKTMPDIDL DFPDNKREIVIQYIRQKYGLHHVANIITFGSFAKKNAIIKELLKFKKLMPFQEKQLFHFLENQKPNQITDDLDDQIKNLL QIASFLEGLPRFTGTHPAGIILSKDNLLQNIPLQKSNHLNLLQTQWEAKELETMGLLKIDLLGLHSLTIIEQIIAAIKES QKDFNLFSIPLNDPKTYQLLSNAKTLGVFQLESGNAKKILTRMAPNNFEDLVALLALNRPGPIDSFDLFLKNRNQFNSQK IYFDSLIDHILKPTHGVILYQEQIMQIASLFAKYSLAEADLFRRAISKKDKTVLLKEKKYFLEKTQKEGHSLSLSNQIYD YILKFANYGFNKSHSVAYSLISYRMAYLKTHYFIEFMTILLNDSLNDPLQTKALLKEAFQAGITLVKPNIFVSSDQYYFK NNQLFLPLSLIKGVNSNFCKELIQERHKKNFTLSFKEFKQRLFFCLNETILTNLILGGALDQMGLNRKTLFHNQALNEVK YYRFLPNYRIVEYEEFLSHELKERQKKVFGFNLDDYIK >Mature_918_residues MRGVFYLQSYYSLLDSLLPLEKLVLKAKENDYEFVALSDDYNLYGMPTFLQLCQKHDIKPILGLKINFLWKNQTGELLVY AKNDQGIKNLIQLATASKKEAQSHLHLEQIEALGKDLFIIICGLCPFWEKIFVNDQKNEFQEVLEKLKTIFSEIFLGISF QSFFLEKLSDNLIDFSTHFEIPCLPVNKTNYDDAKAQETYQILAKMKNKTIYSEIDLSFLTKSEFDIRYQKYPQIMDSLK QLIPKINYQTPLKKNFSLPSYLDFIEKKEKDLPKEVVFEKPEKKLFQNLDAKKYLKKIVYQGLEKFLNPSKSKYEKYSQR INEELKIINDLNYENYFLIVSDLVKYAKKNNILVGPGRGSSSGSLVCFCLEITEIDPLKYNLIFERFLNPQRKTMPDIDL DFPDNKREIVIQYIRQKYGLHHVANIITFGSFAKKNAIIKELLKFKKLMPFQEKQLFHFLENQKPNQITDDLDDQIKNLL QIASFLEGLPRFTGTHPAGIILSKDNLLQNIPLQKSNHLNLLQTQWEAKELETMGLLKIDLLGLHSLTIIEQIIAAIKES QKDFNLFSIPLNDPKTYQLLSNAKTLGVFQLESGNAKKILTRMAPNNFEDLVALLALNRPGPIDSFDLFLKNRNQFNSQK IYFDSLIDHILKPTHGVILYQEQIMQIASLFAKYSLAEADLFRRAISKKDKTVLLKEKKYFLEKTQKEGHSLSLSNQIYD YILKFANYGFNKSHSVAYSLISYRMAYLKTHYFIEFMTILLNDSLNDPLQTKALLKEAFQAGITLVKPNIFVSSDQYYFK NNQLFLPLSLIKGVNSNFCKELIQERHKKNFTLSFKEFKQRLFFCLNETILTNLILGGALDQMGLNRKTLFHNQALNEVK YYRFLPNYRIVEYEEFLSHELKERQKKVFGFNLDDYIK
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase [H]
COG id: COG0587
COG function: function code L; DNA polymerase III, alpha subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-C family. DnaE subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786381, Length=628, Percent_Identity=35.1910828025478, Blast_Score=395, Evalue=1e-111,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011708 - InterPro: IPR004365 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 - InterPro: IPR004805 [H]
Pfam domain/function: PF07733 DNA_pol3_alpha; PF02811 PHP; PF01336 tRNA_anti [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 107244; Mature: 107244
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGVFYLQSYYSLLDSLLPLEKLVLKAKENDYEFVALSDDYNLYGMPTFLQLCQKHDIKP CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCE ILGLKINFLWKNQTGELLVYAKNDQGIKNLIQLATASKKEAQSHLHLEQIEALGKDLFII EECCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHH ICGLCPFWEKIFVNDQKNEFQEVLEKLKTIFSEIFLGISFQSFFLEKLSDNLIDFSTHFE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCCCCC IPCLPVNKTNYDDAKAQETYQILAKMKNKTIYSEIDLSFLTKSEFDIRYQKYPQIMDSLK CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCHHHHCCCCCCCHHHHHHHHHHHHH QLIPKINYQTPLKKNFSLPSYLDFIEKKEKDLPKEVVFEKPEKKLFQNLDAKKYLKKIVY HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCHHHHHHHHHH QGLEKFLNPSKSKYEKYSQRINEELKIINDLNYENYFLIVSDLVKYAKKNNILVGPGRGS HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCEEEECCCCC SSGSLVCFCLEITEIDPLKYNLIFERFLNPQRKTMPDIDLDFPDNKREIVIQYIRQKYGL CCCCEEEEEEEECCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCH HHVANIITFGSFAKKNAIIKELLKFKKLMPFQEKQLFHFLENQKPNQITDDLDDQIKNLL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH QIASFLEGLPRFTGTHPAGIILSKDNLLQNIPLQKSNHLNLLQTQWEAKELETMGLLKID HHHHHHHHCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEH LLGLHSLTIIEQIIAAIKESQKDFNLFSIPLNDPKTYQLLSNAKTLGVFQLESGNAKKIL HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCEEEEEEECCCCHHHHH TRMAPNNFEDLVALLALNRPGPIDSFDLFLKNRNQFNSQKIYFDSLIDHILKPTHGVILY HHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEE QEQIMQIASLFAKYSLAEADLFRRAISKKDKTVLLKEKKYFLEKTQKEGHSLSLSNQIYD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCEEHHHHHHH YILKFANYGFNKSHSVAYSLISYRMAYLKTHYFIEFMTILLNDSLNDPLQTKALLKEAFQ HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AGITLVKPNIFVSSDQYYFKNNQLFLPLSLIKGVNSNFCKELIQERHKKNFTLSFKEFKQ CCCEEECCCEEEECCCEEEECCCEEEEHHHHCCCCHHHHHHHHHHHHCCCCEEEHHHHHH RLFFCLNETILTNLILGGALDQMGLNRKTLFHNQALNEVKYYRFLPNYRIVEYEEFLSHE HHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH LKERQKKVFGFNLDDYIK HHHHHHHHCCCCHHHHCC >Mature Secondary Structure MRGVFYLQSYYSLLDSLLPLEKLVLKAKENDYEFVALSDDYNLYGMPTFLQLCQKHDIKP CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCE ILGLKINFLWKNQTGELLVYAKNDQGIKNLIQLATASKKEAQSHLHLEQIEALGKDLFII EECCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHH ICGLCPFWEKIFVNDQKNEFQEVLEKLKTIFSEIFLGISFQSFFLEKLSDNLIDFSTHFE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCCCCC IPCLPVNKTNYDDAKAQETYQILAKMKNKTIYSEIDLSFLTKSEFDIRYQKYPQIMDSLK CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCHHHHCCCCCCCHHHHHHHHHHHHH QLIPKINYQTPLKKNFSLPSYLDFIEKKEKDLPKEVVFEKPEKKLFQNLDAKKYLKKIVY HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCHHHHHHHHHH QGLEKFLNPSKSKYEKYSQRINEELKIINDLNYENYFLIVSDLVKYAKKNNILVGPGRGS HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCEEEECCCCC SSGSLVCFCLEITEIDPLKYNLIFERFLNPQRKTMPDIDLDFPDNKREIVIQYIRQKYGL CCCCEEEEEEEECCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCH HHVANIITFGSFAKKNAIIKELLKFKKLMPFQEKQLFHFLENQKPNQITDDLDDQIKNLL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH QIASFLEGLPRFTGTHPAGIILSKDNLLQNIPLQKSNHLNLLQTQWEAKELETMGLLKID HHHHHHHHCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEH LLGLHSLTIIEQIIAAIKESQKDFNLFSIPLNDPKTYQLLSNAKTLGVFQLESGNAKKIL HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCEEEEEEECCCCHHHHH TRMAPNNFEDLVALLALNRPGPIDSFDLFLKNRNQFNSQKIYFDSLIDHILKPTHGVILY HHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEE QEQIMQIASLFAKYSLAEADLFRRAISKKDKTVLLKEKKYFLEKTQKEGHSLSLSNQIYD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCEEHHHHHHH YILKFANYGFNKSHSVAYSLISYRMAYLKTHYFIEFMTILLNDSLNDPLQTKALLKEAFQ HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AGITLVKPNIFVSSDQYYFKNNQLFLPLSLIKGVNSNFCKELIQERHKKNFTLSFKEFKQ CCCEEECCCEEEECCCEEEECCCEEEEHHHHCCCCHHHHHHHHHHHHCCCCEEEHHHHHH RLFFCLNETILTNLILGGALDQMGLNRKTLFHNQALNEVKYYRFLPNYRIVEYEEFLSHE HHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH LKERQKKVFGFNLDDYIK HHHHHHHHCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]