Click here to switch to the map view.

The map label for this gene is fliA

Identifier: 197294480

GI number: 197294480

Start: 410521

End: 411192

Strand: Reverse

Name: fliA

Synonym: PAa_0409

Alternate gene names: NA

Gene position: 411192-410521 (Counterclockwise)

Preceding gene: 197294482

Following gene: 197294479

Centisome position: 46.73

GC content: 30.21

Gene sequence:

>672_bases
ATGCCGACAGATGAAAATAGAAAAAAAGAATTATTTCAAGAATTTTTAAAAAATAAAAAAAATTTGCAAATCAGAAATCA
ACTTGTAGAAATTTATTACCCACTAGTTAATAAAATAGTTAGTAAGTTCAAATACTTCCCCTCAATACTTCAAAGACAAG
ATTTATTTCAAGAAGGCGTTTTAGGTTTAATCAATGCCCTCGAAGGGTATGATTTTCAAGTAGACATTGACCAGTTTATT
TATTATGCTTCAAAAAACATCAAATCTCACATCAGAGACCTCATTAAAAAATGCCACCAAGCAGCAATGCCTCGGCAAAA
CAATAAAAAAATAAATAAAGTTGATTTTGAAGAATGGGAAGAAGCAACACAACCCAAATGGAGCAAAATCCTTACGCCTC
ATCAACTATGGCTTAAACAAGCACATCACGACATCTTTGTGCTAATATTAACTAAAAATTTAACTCCCAAGCAATTTGAT
GTAATCAAATTAAGTCTTGGAATTTCTGCAAAAGATGTTGAAGATAACAATAAAGTTATTCGCTCCACCGAAGAAATTGC
GGAAGAATTAAAAAAGAAATACAATGAAAACTTTTCTCCGAGACAGGTATTTAAGCTCCGAGAAAATGGCATTATTAAAT
TACAAAAAATATTCAAAAAAAGGAGAAAATAA

Upstream 100 bases:

>100_bases
AAGACTGACTTATTTTAGTCGGTCTTTTTTTGTACCCAAAACTAAATAATAATAATTTTTCTATCTTTTCTAAAAAAACG
TTTTTTTAGAAAGGAGAACA

Downstream 100 bases:

>100_bases
CTAATGTTAAACAGAACCCAATTAATCGGCCGTCTAACAAAAGACCCAAAAAAAGAATTTTTAAACAGCAAAGGAGAACG
AATTGCTAAAGTTGATTTTG

Product: Putative DNA-directed RNA polymerase,specialized sigma subunit

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; DNA-Directed RNA Polymerase Sigma Subunit

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MPTDENRKKELFQEFLKNKKNLQIRNQLVEIYYPLVNKIVSKFKYFPSILQRQDLFQEGVLGLINALEGYDFQVDIDQFI
YYASKNIKSHIRDLIKKCHQAAMPRQNNKKINKVDFEEWEEATQPKWSKILTPHQLWLKQAHHDIFVLILTKNLTPKQFD
VIKLSLGISAKDVEDNNKVIRSTEEIAEELKKKYNENFSPRQVFKLRENGIIKLQKIFKKRRK

Sequences:

>Translated_223_residues
MPTDENRKKELFQEFLKNKKNLQIRNQLVEIYYPLVNKIVSKFKYFPSILQRQDLFQEGVLGLINALEGYDFQVDIDQFI
YYASKNIKSHIRDLIKKCHQAAMPRQNNKKINKVDFEEWEEATQPKWSKILTPHQLWLKQAHHDIFVLILTKNLTPKQFD
VIKLSLGISAKDVEDNNKVIRSTEEIAEELKKKYNENFSPRQVFKLRENGIIKLQKIFKKRRK
>Mature_222_residues
PTDENRKKELFQEFLKNKKNLQIRNQLVEIYYPLVNKIVSKFKYFPSILQRQDLFQEGVLGLINALEGYDFQVDIDQFIY
YASKNIKSHIRDLIKKCHQAAMPRQNNKKINKVDFEEWEEATQPKWSKILTPHQLWLKQAHHDIFVLILTKNLTPKQFDV
IKLSLGISAKDVEDNNKVIRSTEEIAEELKKKYNENFSPRQVFKLRENGIIKLQKIFKKRRK

Specific function: Unknown

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26661; Mature: 26530

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00715 SIGMA70_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTDENRKKELFQEFLKNKKNLQIRNQLVEIYYPLVNKIVSKFKYFPSILQRQDLFQEGV
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLINALEGYDFQVDIDQFIYYASKNIKSHIRDLIKKCHQAAMPRQNNKKINKVDFEEWE
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
EATQPKWSKILTPHQLWLKQAHHDIFVLILTKNLTPKQFDVIKLSLGISAKDVEDNNKVI
HHCCCHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHEEEEEECCCCCCCCCCHHHH
RSTEEIAEELKKKYNENFSPRQVFKLRENGIIKLQKIFKKRRK
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PTDENRKKELFQEFLKNKKNLQIRNQLVEIYYPLVNKIVSKFKYFPSILQRQDLFQEGV
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLINALEGYDFQVDIDQFIYYASKNIKSHIRDLIKKCHQAAMPRQNNKKINKVDFEEWE
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
EATQPKWSKILTPHQLWLKQAHHDIFVLILTKNLTPKQFDVIKLSLGISAKDVEDNNKVI
HHCCCHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHEEEEEECCCCCCCCCCHHHH
RSTEEIAEELKKKYNENFSPRQVFKLRENGIIKLQKIFKKRRK
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA