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The map label for this gene is 197294375

Identifier: 197294375

GI number: 197294375

Start: 289236

End: 289691

Strand: Reverse

Name: 197294375

Synonym: PAa_0258

Alternate gene names: NA

Gene position: 289691-289236 (Counterclockwise)

Preceding gene: 197294377

Following gene: 197294374

Centisome position: 32.92

GC content: 26.54

Gene sequence:

>456_bases
ATGTTAAGACAAAAATTATTTAAAGATTTTTTAAAAAATAAAAATAATTTAGCAATTCGCGATCAATTGATTAAAATGCA
TTTTCCATTAGTAAAAAAAATAGCCAACAAATTTAAATACTTCCCTAAATCACTCCAAAGAGAGGATTTATACCAAGAAG
GAATTTTAGGTTTAATTAAATCTTTAGATAATTATGAAGATTTAGGTTATGATTTTATTGCCTATGCTACCCCAACAATT
AAAGGTGAAATTACAGAACTTATTAGAGGCCTACAAACCACTTCAACCCCCATAAAGGTTTTTCGGAAAGAAAAACAAAC
AAGTAATATTCCTTTTGAAGAAAACCAACCCCAATCTATTAATAACAACAATCTAAACCCTCATCAAATTTGGCTAAACC
AAGCTAATCATGAATTATTCTTAAAAAAACTTAAAAATATTTTAAATCCCCAATAA

Upstream 100 bases:

>100_bases
AAAATTCTTTAAGATTAACTTAATAGTTAGTCTTTTTTCTTTTCAAGACTAAAAAAATAATTTCATATCTTTTCTAAAAA
TATTTTTAGGAAGGAATAAA

Downstream 100 bases:

>100_bases
TTCGAAATTATTAAATTAAGTTTTGGGATTCCTTTGGGAAATATTAATGAAGAGCCCCAAATTGAGTATTCCAACAAAAA
TATAGGACAAATGTTAAATT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; DNA-Directed RNA Polymerase Sigma Subunit

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANKFKYFPKSLQREDLYQEGILGLIKSLDNYEDLGYDFIAYATPTI
KGEITELIRGLQTTSTPIKVFRKEKQTSNIPFEENQPQSINNNNLNPHQIWLNQANHELFLKKLKNILNPQ

Sequences:

>Translated_151_residues
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANKFKYFPKSLQREDLYQEGILGLIKSLDNYEDLGYDFIAYATPTI
KGEITELIRGLQTTSTPIKVFRKEKQTSNIPFEENQPQSINNNNLNPHQIWLNQANHELFLKKLKNILNPQ
>Mature_151_residues
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANKFKYFPKSLQREDLYQEGILGLIKSLDNYEDLGYDFIAYATPTI
KGEITELIRGLQTTSTPIKVFRKEKQTSNIPFEENQPQSINNNNLNPHQIWLNQANHELFLKKLKNILNPQ

Specific function: Unknown

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17801; Mature: 17801

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANKFKYFPKSLQREDLYQEGILGLIK
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLDNYEDLGYDFIAYATPTIKGEITELIRGLQTTSTPIKVFRKEKQTSNIPFEENQPQSI
HHCCHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
NNNNLNPHQIWLNQANHELFLKKLKNILNPQ
CCCCCCHHHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANKFKYFPKSLQREDLYQEGILGLIK
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLDNYEDLGYDFIAYATPTIKGEITELIRGLQTTSTPIKVFRKEKQTSNIPFEENQPQSI
HHCCHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
NNNNLNPHQIWLNQANHELFLKKLKNILNPQ
CCCCCCHHHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA