| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
Click here to switch to the map view.
The map label for this gene is gyrB [H]
Identifier: 197294338
GI number: 197294338
Start: 250087
End: 252075
Strand: Direct
Name: gyrB [H]
Synonym: PAa_0213
Alternate gene names: 197294338
Gene position: 250087-252075 (Clockwise)
Preceding gene: 197294335
Following gene: 197294339
Centisome position: 28.42
GC content: 31.12
Gene sequence:
>1989_bases TTGAAAAATTACAACGCAGACAGTATTCAAATTTTAGAGGGTTTGGAAGCAGTTCGTAAAAGACCAGGAATGTATATCGG CTCTACTGCTGCTAAAGGATTACATCATTTAGTTTGGGAAATTGTTGATAATTCCATTGATGAAGCTTTAGCGGGTCATG CAAACGAAATCACTTTAGAGATTTTACCCGGAGACATCATTAGTGTAACTGATAACGGTAGAGGAATTCCTGTAGGGATT CACCACAAAACAGGTAAACCAGCGGTAGAAACCATTTTAACTACTTTGCACGCAGGAGGAAAATTTGACAGCTCTTCTTA TAAAATTTCGGGCGGTCTTCATGGAGTGGGAGCCTCTGTTGTAAATGCTTTATCTAGTTGGTTTAGTGTTGAAATTCATT TGGATAAAAAAATCCATTATCAAAAATATGAAAAAGGGGTCCCTGTTGCTCCTTTAGAAGTTATTGGTAAAACAGACCGC AAAGGGACAGTTATTAAATTTTTAGCTGATCCTTCCATTTTTCAAGAAACTACTATTTACGATGCCAAAATTTTGAAAGA ACGCATCCAACAATTATCTTTTTTAAATAAAGGACTTAAATTAAATTTAATTGACCAAAGACAAGAAAAACCTGTAAGCT TTAATTTTTATCACGAAAAAGGCTTGCAAGATTACCTTACTTTTATTAATCAAACTTATATGCAAAAACCTTTTCATAAT CTTTTTGTTTTAGAAAAAGAACTTGATAATTTGGCTTTAGAAATTGTTTTTGAATACACTGTTAATGATGATGAAAAAAG TAAACAACAAGAAGAAGAACAAGCAATTAAAAATTACACTCAAACTCAAAAAATTTATTCTTTTGTTAATAACATCCACA CTCATGAAGGCGGAACACATGAAGAAGGTTTTAAATTGGCTTTAAGTAGGAATTTTTCTAAATATGCTAAAGATTATAAT CTTTTAAAAAAAAATGAAAGTTTATTAAGTGAAGATATTTTAGAAGGAATCACTGCAATTATTTCTTTAAAGCACCAAGA TCCACAATTCGAAGGACAAACTAAAGCTAAATTAGGCAATGTTGAAGTAAGACAAATTGTTTCTCAATATTTTGGTGAAG CTTTAGGAAGATTTTTATTAGAAAATCCAGGTGATGCTAAAAAAATTATCGAGAAATGTTTACTTTCTGCAAACGCTCGT CTAGCTGCAAAAAGAGCGCGTGAAATTGTAAGAAACAAGCCGCTTGATACTTTAGGTTTTGCTGCTAAATTAGCTGATTG CCGTAGCAAAGATCCAAAAATTTCTGAACTTTATATTGTCGAAGGAGATTCTGCAGGAGGTTCTGCTAAACAAGGAAGAG ATTCTCATTTTCAAGCAATTTTGCCTTTAAAAGGGAAAGTGTTAAACGTTGAAAAAACTCAATCTTCCAAAATTTTAACT AACAAAGAAATCAAATCCTTAATTCAAGCAATTGGCATAGGTGTTGATATCAATAAACAAAAAAACCTCAACTTAGATAA ATTACGTTATCATAAAATTATTATTATGACCGATGCGGATGTTGATGGTGCTCACATTAGAACCTTGCTTTTAACTTTCT TTTTCAGAAATTTAAGGATTTTAATTGAAAAAGGTTATATTTATTTCGCAAGACCTCCATTATATAAATATCAAAAAGGT AAAAATATTACTTATTTTTACGAAGAAAAAGAGAAAATCGATTTCTCCCTCAAAAAAAATATTAAAGATGGTTTTCAAAG ATATAAAGGATTAGGTGAAATGAATCCGGACCAACTTTGGGAAACTACAATGAATCCTGAAAAACGAACACTTTTACAAG CCTCTTTAAAAGATGCTTTAAATGCTTTAAGCGACGAAGAAGCGATCAAAGAAGCAAATTCAACTTTTAATATCTTGATG GGTAAAGAAGTTTTTCCAAGAAAAGAATTCATTTTAAATAATGCTTTAGAAGCGGATTTAGATGTTTAA
Upstream 100 bases:
>100_bases TATGTTATAATATCATAAGATTGGAATTATTGAAATCGTTTTTTTAGATTCTGATTCTAAAATTAAAAAAATTTCCAAAG GGAAAAAGGGAAGGTGTTTT
Downstream 100 bases:
>100_bases AAACTATAAAAACAACCAGCTAATTAAATAAAGTAAAGAGGCAAAAAACATGATTAACCAAAATCCTAATTTGAATCAAG GAAAGATTAAAGAAGTTAAT
Product: DNA gyrase beta subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 662; Mature: 662
Protein sequence:
>662_residues MKNYNADSIQILEGLEAVRKRPGMYIGSTAAKGLHHLVWEIVDNSIDEALAGHANEITLEILPGDIISVTDNGRGIPVGI HHKTGKPAVETILTTLHAGGKFDSSSYKISGGLHGVGASVVNALSSWFSVEIHLDKKIHYQKYEKGVPVAPLEVIGKTDR KGTVIKFLADPSIFQETTIYDAKILKERIQQLSFLNKGLKLNLIDQRQEKPVSFNFYHEKGLQDYLTFINQTYMQKPFHN LFVLEKELDNLALEIVFEYTVNDDEKSKQQEEEQAIKNYTQTQKIYSFVNNIHTHEGGTHEEGFKLALSRNFSKYAKDYN LLKKNESLLSEDILEGITAIISLKHQDPQFEGQTKAKLGNVEVRQIVSQYFGEALGRFLLENPGDAKKIIEKCLLSANAR LAAKRAREIVRNKPLDTLGFAAKLADCRSKDPKISELYIVEGDSAGGSAKQGRDSHFQAILPLKGKVLNVEKTQSSKILT NKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRNLRILIEKGYIYFARPPLYKYQKG KNITYFYEEKEKIDFSLKKNIKDGFQRYKGLGEMNPDQLWETTMNPEKRTLLQASLKDALNALSDEEAIKEANSTFNILM GKEVFPRKEFILNNALEADLDV
Sequences:
>Translated_662_residues MKNYNADSIQILEGLEAVRKRPGMYIGSTAAKGLHHLVWEIVDNSIDEALAGHANEITLEILPGDIISVTDNGRGIPVGI HHKTGKPAVETILTTLHAGGKFDSSSYKISGGLHGVGASVVNALSSWFSVEIHLDKKIHYQKYEKGVPVAPLEVIGKTDR KGTVIKFLADPSIFQETTIYDAKILKERIQQLSFLNKGLKLNLIDQRQEKPVSFNFYHEKGLQDYLTFINQTYMQKPFHN LFVLEKELDNLALEIVFEYTVNDDEKSKQQEEEQAIKNYTQTQKIYSFVNNIHTHEGGTHEEGFKLALSRNFSKYAKDYN LLKKNESLLSEDILEGITAIISLKHQDPQFEGQTKAKLGNVEVRQIVSQYFGEALGRFLLENPGDAKKIIEKCLLSANAR LAAKRAREIVRNKPLDTLGFAAKLADCRSKDPKISELYIVEGDSAGGSAKQGRDSHFQAILPLKGKVLNVEKTQSSKILT NKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRNLRILIEKGYIYFARPPLYKYQKG KNITYFYEEKEKIDFSLKKNIKDGFQRYKGLGEMNPDQLWETTMNPEKRTLLQASLKDALNALSDEEAIKEANSTFNILM GKEVFPRKEFILNNALEADLDV >Mature_662_residues MKNYNADSIQILEGLEAVRKRPGMYIGSTAAKGLHHLVWEIVDNSIDEALAGHANEITLEILPGDIISVTDNGRGIPVGI HHKTGKPAVETILTTLHAGGKFDSSSYKISGGLHGVGASVVNALSSWFSVEIHLDKKIHYQKYEKGVPVAPLEVIGKTDR KGTVIKFLADPSIFQETTIYDAKILKERIQQLSFLNKGLKLNLIDQRQEKPVSFNFYHEKGLQDYLTFINQTYMQKPFHN LFVLEKELDNLALEIVFEYTVNDDEKSKQQEEEQAIKNYTQTQKIYSFVNNIHTHEGGTHEEGFKLALSRNFSKYAKDYN LLKKNESLLSEDILEGITAIISLKHQDPQFEGQTKAKLGNVEVRQIVSQYFGEALGRFLLENPGDAKKIIEKCLLSANAR LAAKRAREIVRNKPLDTLGFAAKLADCRSKDPKISELYIVEGDSAGGSAKQGRDSHFQAILPLKGKVLNVEKTQSSKILT NKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRNLRILIEKGYIYFARPPLYKYQKG KNITYFYEEKEKIDFSLKKNIKDGFQRYKGLGEMNPDQLWETTMNPEKRTLLQASLKDALNALSDEEAIKEANSTFNILM GKEVFPRKEFILNNALEADLDV
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=622, Percent_Identity=25.7234726688103, Blast_Score=127, Evalue=5e-29, Organism=Homo sapiens, GI19913408, Length=625, Percent_Identity=26.4, Blast_Score=120, Evalue=4e-27, Organism=Escherichia coli, GI48994957, Length=572, Percent_Identity=48.2517482517483, Blast_Score=514, Evalue=1e-147, Organism=Escherichia coli, GI1789408, Length=650, Percent_Identity=38.1538461538462, Blast_Score=406, Evalue=1e-114, Organism=Caenorhabditis elegans, GI212645845, Length=549, Percent_Identity=25.8652094717668, Blast_Score=131, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17535065, Length=641, Percent_Identity=25.585023400936, Blast_Score=117, Evalue=2e-26, Organism=Caenorhabditis elegans, GI212645657, Length=176, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324241, Length=332, Percent_Identity=27.1084337349398, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI17136538, Length=318, Percent_Identity=26.7295597484277, Blast_Score=76, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 - InterPro: IPR006171 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c; PF01751 Toprim [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 74824; Mature: 74824
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: PS00177 TOPOISOMERASE_II ; PS00230 MAP1B_NEURAXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNYNADSIQILEGLEAVRKRPGMYIGSTAAKGLHHLVWEIVDNSIDEALAGHANEITLE CCCCCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE ILPGDIISVTDNGRGIPVGIHHKTGKPAVETILTTLHAGGKFDSSSYKISGGLHGVGASV EECCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHH VNALSSWFSVEIHLDKKIHYQKYEKGVPVAPLEVIGKTDRKGTVIKFLADPSIFQETTIY HHHHHHHEEEEEEECCCHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHH DAKILKERIQQLSFLNKGLKLNLIDQRQEKPVSFNFYHEKGLQDYLTFINQTYMQKPFHN HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEHHHCCHHHHHHHHHHHHHHCCHHH LFVLEKELDNLALEIVFEYTVNDDEKSKQQEEEQAIKNYTQTQKIYSFVNNIHTHEGGTH HEEEHHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EEGFKLALSRNFSKYAKDYNLLKKNESLLSEDILEGITAIISLKHQDPQFEGQTKAKLGN CCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC VEVRQIVSQYFGEALGRFLLENPGDAKKIIEKCLLSANARLAAKRAREIVRNKPLDTLGF HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHH AAKLADCRSKDPKISELYIVEGDSAGGSAKQGRDSHFQAILPLKGKVLNVEKTQSSKILT HHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCC NKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRNLRI HHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHE LIEKGYIYFARPPLYKYQKGKNITYFYEEKEKIDFSLKKNIKDGFQRYKGLGEMNPDQLW EEECCEEEEECCCCHHHCCCCCEEEEECCCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHH ETTMNPEKRTLLQASLKDALNALSDEEAIKEANSTFNILMGKEVFPRKEFILNNALEADL HHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCC DV CC >Mature Secondary Structure MKNYNADSIQILEGLEAVRKRPGMYIGSTAAKGLHHLVWEIVDNSIDEALAGHANEITLE CCCCCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE ILPGDIISVTDNGRGIPVGIHHKTGKPAVETILTTLHAGGKFDSSSYKISGGLHGVGASV EECCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHH VNALSSWFSVEIHLDKKIHYQKYEKGVPVAPLEVIGKTDRKGTVIKFLADPSIFQETTIY HHHHHHHEEEEEEECCCHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHH DAKILKERIQQLSFLNKGLKLNLIDQRQEKPVSFNFYHEKGLQDYLTFINQTYMQKPFHN HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEHHHCCHHHHHHHHHHHHHHCCHHH LFVLEKELDNLALEIVFEYTVNDDEKSKQQEEEQAIKNYTQTQKIYSFVNNIHTHEGGTH HEEEHHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EEGFKLALSRNFSKYAKDYNLLKKNESLLSEDILEGITAIISLKHQDPQFEGQTKAKLGN CCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC VEVRQIVSQYFGEALGRFLLENPGDAKKIIEKCLLSANARLAAKRAREIVRNKPLDTLGF HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHH AAKLADCRSKDPKISELYIVEGDSAGGSAKQGRDSHFQAILPLKGKVLNVEKTQSSKILT HHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCC NKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRNLRI HHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHE LIEKGYIYFARPPLYKYQKGKNITYFYEEKEKIDFSLKKNIKDGFQRYKGLGEMNPDQLW EEECCEEEEECCCCHHHCCCCCEEEEECCCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHH ETTMNPEKRTLLQASLKDALNALSDEEAIKEANSTFNILMGKEVFPRKEFILNNALEADL HHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCC DV CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2987847; 7584024; 9384377 [H]