| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is cbiQ
Identifier: 197294276
GI number: 197294276
Start: 164912
End: 165760
Strand: Reverse
Name: cbiQ
Synonym: PAa_0139
Alternate gene names: NA
Gene position: 165760-164912 (Counterclockwise)
Preceding gene: 197294277
Following gene: 197294272
Centisome position: 18.84
GC content: 24.03
Gene sequence:
>849_bases ATGAATCAAAATTTTATTTTTAAATATCAAAAACAAAAAAATTTTATTTACCAAATTCAAGGAGCCACTAAATTATTTTT TTTGCTTTTGGTTTCAATTGCTTGCATGTTGATTTATAATATTTGGTTTTTGCTTGGCATGTCCGTTTTCAATTCTTTTT TATTTTTGTGTGCGCAAATTAAATGGAGGCAAGTGGAAAAAATAATTAAAGGTTTTTTGCTTTTCTTGTTGATTAACAAC CTTATTATTTTTTTATTTTTTAGGAAACAAGGAATAGAAATATATCAATCTCAAACTTGGATTTTGAAAAATTTTATTAC CCAAGAACAAATTTTTTATCAAATAAATTTGATTTTAAAATATTTGTCCGTTATTCCTTTATTTTTGATTTTTATTTTCA CCACAAACCCCAGTGAATTAGCAGCTAGTTTAAACAAATGGGGAATTAGTTATAAAATTAGTTATTCTTTAGCTTTGACT TTACGTTATATTCCTGCAATTAAAAAAGATTTTGAAAATATTTCTTTAACACAACAAACTCGTCTGTTGCCTGCATCTCC AAAAGGTAATTTTATCAGCAAAATTGTTTCAAAAATCAAAAAACTTACCCTTATTATTCCTTCTTTAATTTTTGTGAATT TAGATAAAATTGAGATTATTGGTAATGCTATGGAATTAAGACGTTTTGGAAAAAACAAAAAAAGAACTTGGTATTATCAA ACAAAATTAACTTTTTTAGATGTATTAACAATTTTTTTAGGAGTTCATTTATTATTTTTAAGTATTTTTTTATTGATGGA ATACGGAAGATTTTATTATCCTTTTGTCAAAAAAACCCCTTCAAATTAG
Upstream 100 bases:
>100_bases ACTTAAAAGATCATGCTTTCTTGTTTTTCTTGAATAAATTACAAATGCAACCACAAACAAAAACCAATTTTATGAAATAT ATCAAGGAACATTGTTTTAA
Downstream 100 bases:
>100_bases AAAAGGGGGTTATTTAAAATCAACTTGTTTTACAAATGATTTTTGTTATTTTGAGAATGCAAAATAGGAAAAATGACGAA AGATAATTTTTTTAAATTTC
Product: ABC-type cobalt transport system,permease protein
Products: NA
Alternate protein names: Cobalt Transport Family Protein; ABC-Type Cobalt Transport System Permease Component CbiQ; ABC Transporter Permease; ABC-Type Cobalt Transport System; ABC Transporter; Cobalt ABC Transporter Permease Protein; Cobalt Transport Protein CbiQ; Cobalt Transporter; Cobalt ABC Transporter Permease; ABC Transporter Transmembrane Protein; Cobalt ABC Transporter; Cobalt ABC Transporter Permease Component; ABC-Type Cobalt Transport System Permease Protein; ABC Transporter Membrane-Spanning Permease; Cobalt Permease; Cobalt Transporter Superfamily
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MNQNFIFKYQKQKNFIYQIQGATKLFFLLLVSIACMLIYNIWFLLGMSVFNSFLFLCAQIKWRQVEKIIKGFLLFLLINN LIIFLFFRKQGIEIYQSQTWILKNFITQEQIFYQINLILKYLSVIPLFLIFIFTTNPSELAASLNKWGISYKISYSLALT LRYIPAIKKDFENISLTQQTRLLPASPKGNFISKIVSKIKKLTLIIPSLIFVNLDKIEIIGNAMELRRFGKNKKRTWYYQ TKLTFLDVLTIFLGVHLLFLSIFLLMEYGRFYYPFVKKTPSN
Sequences:
>Translated_282_residues MNQNFIFKYQKQKNFIYQIQGATKLFFLLLVSIACMLIYNIWFLLGMSVFNSFLFLCAQIKWRQVEKIIKGFLLFLLINN LIIFLFFRKQGIEIYQSQTWILKNFITQEQIFYQINLILKYLSVIPLFLIFIFTTNPSELAASLNKWGISYKISYSLALT LRYIPAIKKDFENISLTQQTRLLPASPKGNFISKIVSKIKKLTLIIPSLIFVNLDKIEIIGNAMELRRFGKNKKRTWYYQ TKLTFLDVLTIFLGVHLLFLSIFLLMEYGRFYYPFVKKTPSN >Mature_282_residues MNQNFIFKYQKQKNFIYQIQGATKLFFLLLVSIACMLIYNIWFLLGMSVFNSFLFLCAQIKWRQVEKIIKGFLLFLLINN LIIFLFFRKQGIEIYQSQTWILKNFITQEQIFYQINLILKYLSVIPLFLIFIFTTNPSELAASLNKWGISYKISYSLALT LRYIPAIKKDFENISLTQQTRLLPASPKGNFISKIVSKIKKLTLIIPSLIFVNLDKIEIIGNAMELRRFGKNKKRTWYYQ TKLTFLDVLTIFLGVHLLFLSIFLLMEYGRFYYPFVKKTPSN
Specific function: Unknown
COG id: COG0619
COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33393; Mature: 33393
Theoretical pI: Translated: 10.56; Mature: 10.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQNFIFKYQKQKNFIYQIQGATKLFFLLLVSIACMLIYNIWFLLGMSVFNSFLFLCAQI CCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KWRQVEKIIKGFLLFLLINNLIIFLFFRKQGIEIYQSQTWILKNFITQEQIFYQINLILK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLSVIPLFLIFIFTTNPSELAASLNKWGISYKISYSLALTLRYIPAIKKDFENISLTQQT HHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHH RLLPASPKGNFISKIVSKIKKLTLIIPSLIFVNLDKIEIIGNAMELRRFGKNKKRTWYYQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEE TKLTFLDVLTIFLGVHLLFLSIFLLMEYGRFYYPFVKKTPSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHCCCCC >Mature Secondary Structure MNQNFIFKYQKQKNFIYQIQGATKLFFLLLVSIACMLIYNIWFLLGMSVFNSFLFLCAQI CCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KWRQVEKIIKGFLLFLLINNLIIFLFFRKQGIEIYQSQTWILKNFITQEQIFYQINLILK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLSVIPLFLIFIFTTNPSELAASLNKWGISYKISYSLALTLRYIPAIKKDFENISLTQQT HHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHH RLLPASPKGNFISKIVSKIKKLTLIIPSLIFVNLDKIEIIGNAMELRRFGKNKKRTWYYQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEE TKLTFLDVLTIFLGVHLLFLSIFLLMEYGRFYYPFVKKTPSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA