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The map label for this gene is 197294264

Identifier: 197294264

GI number: 197294264

Start: 145183

End: 145557

Strand: Reverse

Name: 197294264

Synonym: PAa_0127

Alternate gene names: NA

Gene position: 145557-145183 (Counterclockwise)

Preceding gene: 197294265

Following gene: 197294263

Centisome position: 16.54

GC content: 28.0

Gene sequence:

>375_bases
ATGTTAAGACAAAAATTATTTAAAGATTTTTTAAAAAATAAAAATAATTTAGCAATTCGCGATCAATTGATTAAAATGCA
TTTTCCATTAGTAAAAAAAATAGCCAACCAATTTAAATACTTCCCTAAAGCACTCCAAAGAGAGGATTTATACCAAGAAG
GAATTTTAGGTTTAATCAAAGTTTTAAATAATTATCAATATTTAGGATGTGATTTTATTGCCTATGCTAACCCAACAATT
AAAGGTGAAATTACAGAACTTATTAGAGGCCTACAAACTACTTCCATTTCCAGAGAAGTTTTTCGGAAAGAAAAACAAGC
AGATAATATTCCTTTTGAAGAAAATGGTAAGCTCCACGAAAATGGCACCATTTGA

Upstream 100 bases:

>100_bases
AAAATTCTTTAAGATTAACTTAATAGTTAGTCTTTTTTCTTTTCAAGACTAAAAAAATAATTTCATATCTTTTCTAAAAA
TATTTTTAGGAAGGAATAAA

Downstream 100 bases:

>100_bases
GAACAACATTTTTTTCCAAAAAAAATATGATTTTTTGAAAAACCAAATTGTTTATTAATTACCTTTATTATAACATAATT
AAAATTATTTGTCAAAATAT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; DNA-Directed RNA Polymerase Sigma Subunit

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANQFKYFPKALQREDLYQEGILGLIKVLNNYQYLGCDFIAYANPTI
KGEITELIRGLQTTSISREVFRKEKQADNIPFEENGKLHENGTI

Sequences:

>Translated_124_residues
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANQFKYFPKALQREDLYQEGILGLIKVLNNYQYLGCDFIAYANPTI
KGEITELIRGLQTTSISREVFRKEKQADNIPFEENGKLHENGTI
>Mature_124_residues
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANQFKYFPKALQREDLYQEGILGLIKVLNNYQYLGCDFIAYANPTI
KGEITELIRGLQTTSISREVFRKEKQADNIPFEENGKLHENGTI

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14533; Mature: 14533

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANQFKYFPKALQREDLYQEGILGLIK
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLNNYQYLGCDFIAYANPTIKGEITELIRGLQTTSISREVFRKEKQADNIPFEENGKLHE
HHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
NGTI
CCCC
>Mature Secondary Structure
MLRQKLFKDFLKNKNNLAIRDQLIKMHFPLVKKIANQFKYFPKALQREDLYQEGILGLIK
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLNNYQYLGCDFIAYANPTIKGEITELIRGLQTTSISREVFRKEKQADNIPFEENGKLHE
HHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
NGTI
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA