| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is leuS [H]
Identifier: 197294242
GI number: 197294242
Start: 112526
End: 114970
Strand: Direct
Name: leuS [H]
Synonym: PAa_0104
Alternate gene names: 197294242
Gene position: 112526-114970 (Clockwise)
Preceding gene: 197294241
Following gene: 197294243
Centisome position: 12.79
GC content: 29.94
Gene sequence:
>2445_bases ATGGCTAAATTAAATTATGATTTTAAAAAAATAGAAGAACATTGGCAAGATTATTGGAAAAAACACGAGATTTTTAAAAC AAAAATTAATAAAGATCAAAAGAAATTTTATTGTTTAGATATGTTTCCTTATCCTTCATCAGAAGGATTACATGTTGGTC ATATTGAAGGTTATGCCGCAACCGATATTGTAAGCCGTTTTAAAAGAATGCAACAATACAACGTTTTTCATCCTTTTGGT TGGGATTCTTTTGGACTTCCAGCAGAACAATACGCTTTGAAAACAGGAAAAAATCCTAGAAATTTTACTTATGAAAATAT TCAGAAATTTAAAATACAAATTCAAAGACTCGGAAAAAGTGTTGATTGGGAAAAAGAATTAGCAACTTCAGATCCTTATT TTTATAAATGGACTCAATGGATTTTTAAAAAACTTTACGAAAAAAATTTAGCCGTTTTGCAAAATGTAGAAGTTTATTTT TGTCCTGCATTAGGAACAGTTCTTGCCAATGAAGAAGTTATTTCTAACGATAAAGGTCTTTTTTCTGAAAGAGGGAATCA TCCTGTTATTAAAAAACAAATGAAACAATGGGTTTTAAAAATTACTGATTATGCTGAAAGACTTTTAGCTGATTTAGATC TTGTTGATTGGCCGCAAAACGTTAAAGATATGCAAATTAATTGGATTGGTAAATCTCAAGGAGCTGTTGTTTCTTTTCCT GTATTTCAACAAAAAAATACTTTAAAAGTCTTTACTACTCGCCCTTATACTCTTTTTGGTGTTACTTTTTTAGTTATAGC TCCTGAACATGAATTATTATCACAAATTACTACTTTAAAACAGCAAGAAGAAGTTTTGGATTATCTAGAATGCACTAAAC AAAAAAAAACCTTAGAAAGAAACATTAACAAAGATAAAAGTGGTGTTTTTACTGGAAGTTATGCTATTAATCCGTGTAAT GGTGAAAAAATTCCTATTTGGGTGGATGATTACGTTTTGCCTCATTTTGGCACAGGCATTTTAATGGGCGTTCCTTGTCA TGATCAAAGAGATTTTGAATTTGCACAAAAACACCATTTAAAAATGATTCAAGTAGTAAAACCAAACCCAATCACTGATA GTAGCCAAAAAAACCCTTTAGAAGTTTTTGAAGGAGATGGCATTATTGTTAATAGTGATTTTTTAAATGGTTTAGACAAC AATCAAGCACAAACAAAGATGATGCAATTTTTAAAAGAAAAAAAATTAGCCTATCCTCATTATACTTATAAATTGCATGA TTGGGTTTTTTCTCGCCAAAGATATTGGGGAGAACCATTATCTATTTTTTATGATGAAAATAATAATATTCACACTATGG ATGATGACTCTTTGCCTTTGGAATTGCCTGTTTTAGATAAAATTCAACCTTCAGGAACGGGAGAATCGCCATTATCAAAA GCATCTTCTTGGTTGTATTTTGAAAAAGATGGCAAAAAGTACCGAAGAGATTCCAATACTATGCCACAACTTGCAGGAAG CTCTTGGTATTATATTGCTTATGTTTTAAAAAACATTTCAGGGATCACCCCTTTAAACACATCCGAAGCGAAAGAGTTAT TAGACTATTACTTGCCTGTTGATTTGTATATTGGCGGGACAGAACATGCAGTCGGTCATTTATTATATGCTCGTTTTTGG CATAAATTTTTATATGATTTGGGTTTAGTTTCTCAGAAAGAACCTTTTCAAAAATTAGTTAATCAAGGAATGATTTTAGG ACATGACCATACTAAAATGTCTAAATCAAAAGGCAATGGCGTAAATGCTTCTTCAATGTTAGAAAAGTATGGCGCGGACG CCTTAAGGTTGCATATTATGTTTATGGGTCCTTTAGAAGATGTTAAAAGTTGGAACGAAAAAGGTTTGCAAGGGATACAA CGTTTTTTAAATAGAGTTCATCAGATGTGTTCTTTTGAAATGATAGATCAAAAAGATGTTTTTTTAGAAAAAATTTTGCA TCAAACAATTCAAATAGTTACTCAAAGTTATGAAAAATTAAAATTTAACAAAGCTATTAGTCAACTAATGATTTTTGTTA ATCACGTTTACAAATCCCAAAAAATCACTAAAGAGCAATGCCAAATTTTTTTACAAATGTTAAACCCCCTCACACCTCAT TTGACAGAAGAGTTAAATGCAACAATTTTGAAGAATAAGGAAATGTTAGTTAATATGACTTGGCCTCATTATAATCCTAA ATATTTAGGAAACGAACAATCAAATATTATTGTTCAAGTTAATGGCAAAACACGCTCTATTTTAACTGTATCTTTGGGCG TTTCTTCAGAGAAAATCCAAAAATTAGCTTTTCAAGATCAAAAAGTACATAAATTTATTTTTCAAAAACAAATTCAGAAA GTAATTTATATTCCTGAAAAATTATTAAATATCATTGTTATTTGA
Upstream 100 bases:
>100_bases TTTAATATTTTACTTTTTTCATTCCCGTTTTGCGGCAGTATCCAGGCCAATAATTAATAACATATCTTTTGGCTTCAAAA ATAATAGAAAGTTTGTAATA
Downstream 100 bases:
>100_bases TTATTTAATTTTGCTTTTAAATTCTTAATAAAATTCAAGAAGTGTTTTTTCAAATTCTATTCAAATAAGTTTATGTAAAT TTTGGAGAAAAAGGTATGTT
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS [H]
Number of amino acids: Translated: 814; Mature: 813
Protein sequence:
>814_residues MAKLNYDFKKIEEHWQDYWKKHEIFKTKINKDQKKFYCLDMFPYPSSEGLHVGHIEGYAATDIVSRFKRMQQYNVFHPFG WDSFGLPAEQYALKTGKNPRNFTYENIQKFKIQIQRLGKSVDWEKELATSDPYFYKWTQWIFKKLYEKNLAVLQNVEVYF CPALGTVLANEEVISNDKGLFSERGNHPVIKKQMKQWVLKITDYAERLLADLDLVDWPQNVKDMQINWIGKSQGAVVSFP VFQQKNTLKVFTTRPYTLFGVTFLVIAPEHELLSQITTLKQQEEVLDYLECTKQKKTLERNINKDKSGVFTGSYAINPCN GEKIPIWVDDYVLPHFGTGILMGVPCHDQRDFEFAQKHHLKMIQVVKPNPITDSSQKNPLEVFEGDGIIVNSDFLNGLDN NQAQTKMMQFLKEKKLAYPHYTYKLHDWVFSRQRYWGEPLSIFYDENNNIHTMDDDSLPLELPVLDKIQPSGTGESPLSK ASSWLYFEKDGKKYRRDSNTMPQLAGSSWYYIAYVLKNISGITPLNTSEAKELLDYYLPVDLYIGGTEHAVGHLLYARFW HKFLYDLGLVSQKEPFQKLVNQGMILGHDHTKMSKSKGNGVNASSMLEKYGADALRLHIMFMGPLEDVKSWNEKGLQGIQ RFLNRVHQMCSFEMIDQKDVFLEKILHQTIQIVTQSYEKLKFNKAISQLMIFVNHVYKSQKITKEQCQIFLQMLNPLTPH LTEELNATILKNKEMLVNMTWPHYNPKYLGNEQSNIIVQVNGKTRSILTVSLGVSSEKIQKLAFQDQKVHKFIFQKQIQK VIYIPEKLLNIIVI
Sequences:
>Translated_814_residues MAKLNYDFKKIEEHWQDYWKKHEIFKTKINKDQKKFYCLDMFPYPSSEGLHVGHIEGYAATDIVSRFKRMQQYNVFHPFG WDSFGLPAEQYALKTGKNPRNFTYENIQKFKIQIQRLGKSVDWEKELATSDPYFYKWTQWIFKKLYEKNLAVLQNVEVYF CPALGTVLANEEVISNDKGLFSERGNHPVIKKQMKQWVLKITDYAERLLADLDLVDWPQNVKDMQINWIGKSQGAVVSFP VFQQKNTLKVFTTRPYTLFGVTFLVIAPEHELLSQITTLKQQEEVLDYLECTKQKKTLERNINKDKSGVFTGSYAINPCN GEKIPIWVDDYVLPHFGTGILMGVPCHDQRDFEFAQKHHLKMIQVVKPNPITDSSQKNPLEVFEGDGIIVNSDFLNGLDN NQAQTKMMQFLKEKKLAYPHYTYKLHDWVFSRQRYWGEPLSIFYDENNNIHTMDDDSLPLELPVLDKIQPSGTGESPLSK ASSWLYFEKDGKKYRRDSNTMPQLAGSSWYYIAYVLKNISGITPLNTSEAKELLDYYLPVDLYIGGTEHAVGHLLYARFW HKFLYDLGLVSQKEPFQKLVNQGMILGHDHTKMSKSKGNGVNASSMLEKYGADALRLHIMFMGPLEDVKSWNEKGLQGIQ RFLNRVHQMCSFEMIDQKDVFLEKILHQTIQIVTQSYEKLKFNKAISQLMIFVNHVYKSQKITKEQCQIFLQMLNPLTPH LTEELNATILKNKEMLVNMTWPHYNPKYLGNEQSNIIVQVNGKTRSILTVSLGVSSEKIQKLAFQDQKVHKFIFQKQIQK VIYIPEKLLNIIVI >Mature_813_residues AKLNYDFKKIEEHWQDYWKKHEIFKTKINKDQKKFYCLDMFPYPSSEGLHVGHIEGYAATDIVSRFKRMQQYNVFHPFGW DSFGLPAEQYALKTGKNPRNFTYENIQKFKIQIQRLGKSVDWEKELATSDPYFYKWTQWIFKKLYEKNLAVLQNVEVYFC PALGTVLANEEVISNDKGLFSERGNHPVIKKQMKQWVLKITDYAERLLADLDLVDWPQNVKDMQINWIGKSQGAVVSFPV FQQKNTLKVFTTRPYTLFGVTFLVIAPEHELLSQITTLKQQEEVLDYLECTKQKKTLERNINKDKSGVFTGSYAINPCNG EKIPIWVDDYVLPHFGTGILMGVPCHDQRDFEFAQKHHLKMIQVVKPNPITDSSQKNPLEVFEGDGIIVNSDFLNGLDNN QAQTKMMQFLKEKKLAYPHYTYKLHDWVFSRQRYWGEPLSIFYDENNNIHTMDDDSLPLELPVLDKIQPSGTGESPLSKA SSWLYFEKDGKKYRRDSNTMPQLAGSSWYYIAYVLKNISGITPLNTSEAKELLDYYLPVDLYIGGTEHAVGHLLYARFWH KFLYDLGLVSQKEPFQKLVNQGMILGHDHTKMSKSKGNGVNASSMLEKYGADALRLHIMFMGPLEDVKSWNEKGLQGIQR FLNRVHQMCSFEMIDQKDVFLEKILHQTIQIVTQSYEKLKFNKAISQLMIFVNHVYKSQKITKEQCQIFLQMLNPLTPHL TEELNATILKNKEMLVNMTWPHYNPKYLGNEQSNIIVQVNGKTRSILTVSLGVSSEKIQKLAFQDQKVHKFIFQKQIQKV IYIPEKLLNIIVI
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI7661872, Length=869, Percent_Identity=30.1495972382048, Blast_Score=358, Evalue=1e-98, Organism=Homo sapiens, GI94721239, Length=716, Percent_Identity=23.6033519553073, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI94721241, Length=716, Percent_Identity=23.6033519553073, Blast_Score=112, Evalue=1e-24, Organism=Escherichia coli, GI1786861, Length=878, Percent_Identity=35.9908883826879, Blast_Score=541, Evalue=1e-155, Organism=Escherichia coli, GI1790708, Length=401, Percent_Identity=24.4389027431421, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71997510, Length=282, Percent_Identity=36.8794326241135, Blast_Score=178, Evalue=1e-44, Organism=Caenorhabditis elegans, GI71997517, Length=274, Percent_Identity=37.5912408759124, Blast_Score=176, Evalue=3e-44, Organism=Caenorhabditis elegans, GI212645227, Length=304, Percent_Identity=25, Blast_Score=103, Evalue=5e-22, Organism=Caenorhabditis elegans, GI71980946, Length=160, Percent_Identity=32.5, Blast_Score=69, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323414, Length=825, Percent_Identity=33.0909090909091, Blast_Score=394, Evalue=1e-110, Organism=Saccharomyces cerevisiae, GI6321531, Length=917, Percent_Identity=19.5201744820065, Blast_Score=101, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6319395, Length=760, Percent_Identity=22.7631578947368, Blast_Score=100, Evalue=6e-22, Organism=Drosophila melanogaster, GI21355409, Length=900, Percent_Identity=28.6666666666667, Blast_Score=300, Evalue=3e-81, Organism=Drosophila melanogaster, GI28574730, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=2e-12, Organism=Drosophila melanogaster, GI24668547, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=2e-12, Organism=Drosophila melanogaster, GI24668543, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=2e-12,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 [H]
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1 [H]
EC number: =6.1.1.4 [H]
Molecular weight: Translated: 94838; Mature: 94707
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKLNYDFKKIEEHWQDYWKKHEIFKTKINKDQKKFYCLDMFPYPSSEGLHVGHIEGYAA CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEECCCCHHH TDIVSRFKRMQQYNVFHPFGWDSFGLPAEQYALKTGKNPRNFTYENIQKFKIQIQRLGKS HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC VDWEKELATSDPYFYKWTQWIFKKLYEKNLAVLQNVEVYFCPALGTVLANEEVISNDKGL CCCHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCEEECCHHHHHHCCCHHHCCCCCC FSERGNHPVIKKQMKQWVLKITDYAERLLADLDLVDWPQNVKDMQINWIGKSQGAVVSFP HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEC VFQQKNTLKVFTTRPYTLFGVTFLVIAPEHELLSQITTLKQQEEVLDYLECTKQKKTLER CCCCCCCEEEEECCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NINKDKSGVFTGSYAINPCNGEKIPIWVDDYVLPHFGTGILMGVPCHDQRDFEFAQKHHL CCCCCCCCEEECCEEECCCCCCEEEEEECCEECCCCCCCEEEECCCCCCCCHHHHHHHCC KMIQVVKPNPITDSSQKNPLEVFEGDGIIVNSDFLNGLDNNQAQTKMMQFLKEKKLAYPH EEEEEECCCCCCCCCCCCCCEEECCCCEEEECHHHCCCCCCHHHHHHHHHHHHHCCCCCC YTYKLHDWVFSRQRYWGEPLSIFYDENNNIHTMDDDSLPLELPVLDKIQPSGTGESPLSK EEEEHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCEECCCHHCCCCCCCCCCCHHH ASSWLYFEKDGKKYRRDSNTMPQLAGSSWYYIAYVLKNISGITPLNTSEAKELLDYYLPV CCCEEEECCCCHHHHCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCE DLYIGGTEHAVGHLLYARFWHKFLYDLGLVSQKEPFQKLVNQGMILGHDHTKMSKSKGNG EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEECCCCHHCCCCCCC VNASSMLEKYGADALRLHIMFMGPLEDVKSWNEKGLQGIQRFLNRVHQMCSFEMIDQKDV CCHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH FLEKILHQTIQIVTQSYEKLKFNKAISQLMIFVNHVYKSQKITKEQCQIFLQMLNPLTPH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH LTEELNATILKNKEMLVNMTWPHYNPKYLGNEQSNIIVQVNGKTRSILTVSLGVSSEKIQ HHHHHCHHEEECCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCHHHHH KLAFQDQKVHKFIFQKQIQKVIYIPEKLLNIIVI HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC >Mature Secondary Structure AKLNYDFKKIEEHWQDYWKKHEIFKTKINKDQKKFYCLDMFPYPSSEGLHVGHIEGYAA CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEECCCCHHH TDIVSRFKRMQQYNVFHPFGWDSFGLPAEQYALKTGKNPRNFTYENIQKFKIQIQRLGKS HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC VDWEKELATSDPYFYKWTQWIFKKLYEKNLAVLQNVEVYFCPALGTVLANEEVISNDKGL CCCHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCEEECCHHHHHHCCCHHHCCCCCC FSERGNHPVIKKQMKQWVLKITDYAERLLADLDLVDWPQNVKDMQINWIGKSQGAVVSFP HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEC VFQQKNTLKVFTTRPYTLFGVTFLVIAPEHELLSQITTLKQQEEVLDYLECTKQKKTLER CCCCCCCEEEEECCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NINKDKSGVFTGSYAINPCNGEKIPIWVDDYVLPHFGTGILMGVPCHDQRDFEFAQKHHL CCCCCCCCEEECCEEECCCCCCEEEEEECCEECCCCCCCEEEECCCCCCCCHHHHHHHCC KMIQVVKPNPITDSSQKNPLEVFEGDGIIVNSDFLNGLDNNQAQTKMMQFLKEKKLAYPH EEEEEECCCCCCCCCCCCCCEEECCCCEEEECHHHCCCCCCHHHHHHHHHHHHHCCCCCC YTYKLHDWVFSRQRYWGEPLSIFYDENNNIHTMDDDSLPLELPVLDKIQPSGTGESPLSK EEEEHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCEECCCHHCCCCCCCCCCCHHH ASSWLYFEKDGKKYRRDSNTMPQLAGSSWYYIAYVLKNISGITPLNTSEAKELLDYYLPV CCCEEEECCCCHHHHCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCE DLYIGGTEHAVGHLLYARFWHKFLYDLGLVSQKEPFQKLVNQGMILGHDHTKMSKSKGNG EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEECCCCHHCCCCCCC VNASSMLEKYGADALRLHIMFMGPLEDVKSWNEKGLQGIQRFLNRVHQMCSFEMIDQKDV CCHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH FLEKILHQTIQIVTQSYEKLKFNKAISQLMIFVNHVYKSQKITKEQCQIFLQMLNPLTPH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH LTEELNATILKNKEMLVNMTWPHYNPKYLGNEQSNIIVQVNGKTRSILTVSLGVSSEKIQ HHHHHCHHEEECCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCHHHHH KLAFQDQKVHKFIFQKQIQKVIYIPEKLLNIIVI HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA