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The map label for this gene is pchR [H]

Identifier: 170757856

GI number: 170757856

Start: 3075306

End: 3076346

Strand: Reverse

Name: pchR [H]

Synonym: CLD_1701

Alternate gene names: 170757856

Gene position: 3076346-3075306 (Counterclockwise)

Preceding gene: 170756421

Following gene: 170754949

Centisome position: 77.72

GC content: 34.97

Gene sequence:

>1041_bases
ATGGAGCATAAATTCTATATAAATTCAAGAAATGGGTATCTAAATATGCTGGAACAGTATAAAGCGATGTATGAACAAAT
TGGATGTGCTCGTTTCTTGCCTAACAATGATGAGTGTAAAGGCGTTGTTTACGATATAAAGCCAGAATACGGAGAAGGCA
CTATACAGATTTATAATTTATTAGGTAATAGTATGTTACTCATTTGTGACTTTGTTTTTTCTGAGGACATAGAAACAGTG
TTTGATTTATCCGGGGGATATTTTGAAATCGAATACTGTATAGATGGGTGTATGTATATCAAAGAAGGAAAAGCAGGAGA
CACATGCTTTGCTCCAAACAATTTATCTGTATCTATGTCACAAGATATGTGTGGAACTGTGAAGCGATGCGCTCACCAAA
AATATCAAGGGGTATCTATTATAGCCAGTAAAAGTGCAATTCCCTTTTATTTTGGTAGTGCTGGAATTGAAGTATGGAAT
GATACGATAGAAAAACTGGAAGATCAGCTTCGTTCGAAGTATTATTTAGGTTTAAACACTCCTCCTGAAATAGCTGCTGC
TTTTCTGCAAATATTTAATTGCCGCCTCCCTACAAAAGCCCGTACTTTATTTTATGAAAGTAAGGTTATGGAGACATTAT
CAATGATCGTATCCAACGAAATTATGAAGCGTGAAAAATATGAGCTAACAGCACTCACCCCTTATGAATTACAAAAAATC
AAGGAAATTCCTCAAATCCTGCTTGAACAGCCATTTGAATTACCAAGCATTCTTTCACTATCTAAGAAGTTGGTCATTAA
TCCTAAAAAACTGACCAAAGGTTTCAAGCTTGTTTATGGAGATACTATTTTTAGCTATCACAGGAAATTTTCTTTACAAC
GGGCTTCTTCGATGCTGTTGAACACAGAGAAATCAATTAATGAAATTGCCTATGAAATTGGCTATTCAAGCTCTAGCAAT
TTCTGTGCAGCATTTAAAAAGCAATATGGTATTAGTCCATTAAAATATAGGGAATCCTCCTTACTGCGCAATGCTGAATA
A

Upstream 100 bases:

>100_bases
TAAATAGGGCAGTATAGTATAATTAATATAGTTAGTTTATTCTAATAGGTTGCTTAAATGTAGTTTTTTGGTAGTATTAA
GGCAAGAAAGGAGCTTGTAA

Downstream 100 bases:

>100_bases
GTTTTACTCGTAAAATGATTTAAATATGCCGTACTTTAACCACAGGTTTATACTTGTGGTTTTTTATTTTTCCCACATTC
ATTTAAAGATAGTCTTTCTC

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MEHKFYINSRNGYLNMLEQYKAMYEQIGCARFLPNNDECKGVVYDIKPEYGEGTIQIYNLLGNSMLLICDFVFSEDIETV
FDLSGGYFEIEYCIDGCMYIKEGKAGDTCFAPNNLSVSMSQDMCGTVKRCAHQKYQGVSIIASKSAIPFYFGSAGIEVWN
DTIEKLEDQLRSKYYLGLNTPPEIAAAFLQIFNCRLPTKARTLFYESKVMETLSMIVSNEIMKREKYELTALTPYELQKI
KEIPQILLEQPFELPSILSLSKKLVINPKKLTKGFKLVYGDTIFSYHRKFSLQRASSMLLNTEKSINEIAYEIGYSSSSN
FCAAFKKQYGISPLKYRESSLLRNAE

Sequences:

>Translated_346_residues
MEHKFYINSRNGYLNMLEQYKAMYEQIGCARFLPNNDECKGVVYDIKPEYGEGTIQIYNLLGNSMLLICDFVFSEDIETV
FDLSGGYFEIEYCIDGCMYIKEGKAGDTCFAPNNLSVSMSQDMCGTVKRCAHQKYQGVSIIASKSAIPFYFGSAGIEVWN
DTIEKLEDQLRSKYYLGLNTPPEIAAAFLQIFNCRLPTKARTLFYESKVMETLSMIVSNEIMKREKYELTALTPYELQKI
KEIPQILLEQPFELPSILSLSKKLVINPKKLTKGFKLVYGDTIFSYHRKFSLQRASSMLLNTEKSINEIAYEIGYSSSSN
FCAAFKKQYGISPLKYRESSLLRNAE
>Mature_346_residues
MEHKFYINSRNGYLNMLEQYKAMYEQIGCARFLPNNDECKGVVYDIKPEYGEGTIQIYNLLGNSMLLICDFVFSEDIETV
FDLSGGYFEIEYCIDGCMYIKEGKAGDTCFAPNNLSVSMSQDMCGTVKRCAHQKYQGVSIIASKSAIPFYFGSAGIEVWN
DTIEKLEDQLRSKYYLGLNTPPEIAAAFLQIFNCRLPTKARTLFYESKVMETLSMIVSNEIMKREKYELTALTPYELQKI
KEIPQILLEQPFELPSILSLSKKLVINPKKLTKGFKLVYGDTIFSYHRKFSLQRASSMLLNTEKSINEIAYEIGYSSSSN
FCAAFKKQYGISPLKYRESSLLRNAE

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39559; Mature: 39559

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHKFYINSRNGYLNMLEQYKAMYEQIGCARFLPNNDECKGVVYDIKPEYGEGTIQIYNL
CCCEEEEECCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCCCCCCEEEEEH
LGNSMLLICDFVFSEDIETVFDLSGGYFEIEYCIDGCMYIKEGKAGDTCFAPNNLSVSMS
HCCCCEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEECCCCCCCEECCCCCEEEEC
QDMCGTVKRCAHQKYQGVSIIASKSAIPFYFGSAGIEVWNDTIEKLEDQLRSKYYLGLNT
HHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHCEEECCCC
PPEIAAAFLQIFNCRLPTKARTLFYESKVMETLSMIVSNEIMKREKYELTALTPYELQKI
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHH
KEIPQILLEQPFELPSILSLSKKLVINPKKLTKGFKLVYGDTIFSYHRKFSLQRASSMLL
HHHHHHHHHCCCCCHHHHHHCHHHEECHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHH
NTEKSINEIAYEIGYSSSSNFCAAFKKQYGISPLKYRESSLLRNAE
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MEHKFYINSRNGYLNMLEQYKAMYEQIGCARFLPNNDECKGVVYDIKPEYGEGTIQIYNL
CCCEEEEECCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCCCCCCEEEEEH
LGNSMLLICDFVFSEDIETVFDLSGGYFEIEYCIDGCMYIKEGKAGDTCFAPNNLSVSMS
HCCCCEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEECCCCCCCEECCCCCEEEEC
QDMCGTVKRCAHQKYQGVSIIASKSAIPFYFGSAGIEVWNDTIEKLEDQLRSKYYLGLNT
HHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHCEEECCCC
PPEIAAAFLQIFNCRLPTKARTLFYESKVMETLSMIVSNEIMKREKYELTALTPYELQKI
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHH
KEIPQILLEQPFELPSILSLSKKLVINPKKLTKGFKLVYGDTIFSYHRKFSLQRASSMLL
HHHHHHHHHCCCCCHHHHHHCHHHEECHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHH
NTEKSINEIAYEIGYSSSSNFCAAFKKQYGISPLKYRESSLLRNAE
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]