Click here to switch to the map view.

The map label for this gene is hofF [C]

Identifier: 170757657

GI number: 170757657

Start: 2035728

End: 2036126

Strand: Reverse

Name: hofF [C]

Synonym: CLD_2719

Alternate gene names: 170757657

Gene position: 2036126-2035728 (Counterclockwise)

Preceding gene: 170756610

Following gene: 170755021

Centisome position: 51.44

GC content: 22.31

Gene sequence:

>399_bases
ATGGATTTATTTTATTATAAAGCCAAGGATATTAAAGGAAATGTACTAAAAGGAGCCTGTAATGAAAAAGAAAAGGTTAA
TATTTATAAAGAATTAAGAGAAAAGGGATATTTTTTATTAAATATAACTAATAAAAATATATTTAAAATAAGAAGTGAAA
AAATTACTTTAAAGGACTGCTCAATTTTATGCAATAAACTTTATATGCTTATGGCCTCAGGGATAAACATAACGGATGCT
ATAAATATAGTTTATGAGGATTTTAATAATGTTCATGTAAAAAATAGTCTCTATACCATAAGAAATAATATATTAAGAGG
AGATAGCATTTATAATAGCTTTAAAGGCTTTAGTAATATATATCCTAAATTTTTATTGAGCATGATATATAAAATATAG

Upstream 100 bases:

>100_bases
GATTGCTTTAAGATTCATTTTCAGTATATATTTCTAAGAAAATGTCTTTTAAACTTAAAGATGATCTTATTTTAGAAAGG
AAGCGAATAAAAATATAGGT

Downstream 100 bases:

>100_bases
TGTAATCAACTAAATAGTATTTATAGTATTTAATGTAACACTCTTATGGAAAGATATAACTTAGATTATTTAATATATAG
TTTGAAATATTATAGTAGTT

Product: general secretion pathway protein

Products: NA

Alternate protein names: Type II Secretion System F Domain

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDCSILCNKLYMLMASGINITDA
INIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNIYPKFLLSMIYKI

Sequences:

>Translated_132_residues
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDCSILCNKLYMLMASGINITDA
INIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNIYPKFLLSMIYKI
>Mature_132_residues
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDCSILCNKLYMLMASGINITDA
INIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNIYPKFLLSMIYKI

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15461; Mature: 15461

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDC
CCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCEEEEECCEEEHHHH
SILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNI
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHH
YPKFLLSMIYKI
HHHHHHHHHHCC
>Mature Secondary Structure
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDC
CCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCEEEEECCEEEHHHH
SILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNI
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHH
YPKFLLSMIYKI
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA