| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170757370
Identifier: 170757370
GI number: 170757370
Start: 2731318
End: 2731572
Strand: Reverse
Name: 170757370
Synonym: CLD_2004
Alternate gene names: NA
Gene position: 2731572-2731318 (Counterclockwise)
Preceding gene: 170757368
Following gene: 170756289
Centisome position: 69.01
GC content: 30.2
Gene sequence:
>255_bases ATGGATAATAATGTAGATACAATAACTTTAACGGATGAAGAAGGAAAAGAAACTGAATTTGAGGTAATAACAAAGCTTGA TATAGAAGATAAAGAATATGTAGTTGTAGTTCCAAAGAATGAAGAAGTAGATGAGGCTATAGCTCTTAGAATAGATAATA ATGATGATGGTGAAGAAGTGTTAGTACCAGTAGAAGAAGATGAAGAATTTAATATGGTAGCAGAGGCTTATGAATTGCTA TTTTCAGAAGAATAA
Upstream 100 bases:
>100_bases TTATCTCGCTCAAAGAGGAAAAAAATAGTAGATAAAGTAGCTGCTACTTATATATTACAAGGATACTTAGATAGTTTATC AAAATAAGGAGGATAATAAT
Downstream 100 bases:
>100_bases TAGTTTTTATTCAATTTATAAATATATAATTTGAAATTACAGATAAAGATTATCAATTGACAATAGAACAATACTGTATT AAACTTATATTAAAATAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 84; Mature: 84
Protein sequence:
>84_residues MDNNVDTITLTDEEGKETEFEVITKLDIEDKEYVVVVPKNEEVDEAIALRIDNNDDGEEVLVPVEEDEEFNMVAEAYELL FSEE
Sequences:
>Translated_84_residues MDNNVDTITLTDEEGKETEFEVITKLDIEDKEYVVVVPKNEEVDEAIALRIDNNDDGEEVLVPVEEDEEFNMVAEAYELL FSEE >Mature_84_residues MDNNVDTITLTDEEGKETEFEVITKLDIEDKEYVVVVPKNEEVDEAIALRIDNNDDGEEVLVPVEEDEEFNMVAEAYELL FSEE
Specific function: Unknown
COG id: COG3906
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0473 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009711 [H]
Pfam domain/function: PF06949 DUF1292 [H]
EC number: NA
Molecular weight: Translated: 9656; Mature: 9656
Theoretical pI: Translated: 3.39; Mature: 3.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNNVDTITLTDEEGKETEFEVITKLDIEDKEYVVVVPKNEEVDEAIALRIDNNDDGEEV CCCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCCCEE LVPVEEDEEFNMVAEAYELLFSEE EEECCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MDNNVDTITLTDEEGKETEFEVITKLDIEDKEYVVVVPKNEEVDEAIALRIDNNDDGEEV CCCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCCCEE LVPVEEDEEFNMVAEAYELLFSEE EEECCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA