| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is kdpE [C]
Identifier: 170757319
GI number: 170757319
Start: 618330
End: 619283
Strand: Direct
Name: kdpE [C]
Synonym: CLD_0245
Alternate gene names: 170757319
Gene position: 618330-619283 (Clockwise)
Preceding gene: 170756419
Following gene: 170755206
Centisome position: 15.62
GC content: 24.95
Gene sequence:
>954_bases GTGCAAAATATTATAATATTAGACGATATGAGTTATATGAGATATAGAGTTAAAGATCTTTTAGAGGAAAAAGACATAAA AGTTTATGAGACTTCTACTTCCTTTGAATTTTTTAATAAGCTTTATGAAAAAAAGGATAATATAGATTTGATAATACTGG AGTTAGGTTTAACTAGGGAAGATGGATTTGAGGTAGTTGAAAAAATAAGAGAAAAGAATGTAGACATTCCTATAGTTATA CTAACTAAGGTAAATACTAGAGATGCCTTTGCAAAGGTAATAAGAGAAGGTATTTCAGATTATATATTAAAACCTTTTGA TAATAAAGTTTTATTAGATAGAATAGTTAAAACTATAAAGGAAAGTAAAGCTAGTAAAGAAGAAGTATCAATAGGGAAGA AATCTAAAGTTCAAAAAATATATATTAGTGAAGATAATGAAAACATTGATAAAGATAAAGAGGAATTTGCTAAAGGAAAA GAAATCGCAGATTTTAATGGTATAGAAGAAGAATTACCAGAAGAGTTTAAAATTTATTTTGTTGATGAATTAAATAAAGC TAAAACAGATAATACAAAAGTTTCTTCTGTTGTATTTACTCTTATAAAAAATACAGATGAGGAAGAAAAAATAGATGTAA AAGAAAGTTATATAACATTAACAGAGGTTTTTTATAAAGGAATAAAGGATATTTTTAAAGCCCCAAATTTTATAACAAAA CATGGATTATTAACTTTTGTAGCTGTATTGCCAAATTGTAATGAAGAGAAAGTTGAAGATATGAAAAATAGAATACAAGA AAAATATAAAATGCTTTCTTTAATTTATCCTCAATTATCACAATATCATGTAGGATACGGAAATGTAACTTATCCTTTAG ATGGAGATAACGTAGAAGCACTTATAGATAAACTTATGGATAAGATGAGAGAGAATATCAAATTAAAAGAATAA
Upstream 100 bases:
>100_bases ATGGACAAATCATAACAATAGATGGAGCTATGTGTTAATTAATATTAAATATAAAGATTCCAAAGTATAAAAAAATAATT TAAATATGAGAGTGATAAGC
Downstream 100 bases:
>100_bases TTGAAAAAAATTTTATTGTTATTCCCAATTAAGAAGTAAGGAAAAGAAGGAAAGGCCCCCAGCAATTATTTTGCGGGCAG GCCTTTTATTCATACTAAAA
Product: response regulator
Products: NA
Alternate protein names: Transcriptional Regulator; Two Component; Chemotaxis Response Regulator; Two-Component System Response Regulatory Protein RprY; Response Regulator Receiver Protein
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MQNIIILDDMSYMRYRVKDLLEEKDIKVYETSTSFEFFNKLYEKKDNIDLIILELGLTREDGFEVVEKIREKNVDIPIVI LTKVNTRDAFAKVIREGISDYILKPFDNKVLLDRIVKTIKESKASKEEVSIGKKSKVQKIYISEDNENIDKDKEEFAKGK EIADFNGIEEELPEEFKIYFVDELNKAKTDNTKVSSVVFTLIKNTDEEEKIDVKESYITLTEVFYKGIKDIFKAPNFITK HGLLTFVAVLPNCNEEKVEDMKNRIQEKYKMLSLIYPQLSQYHVGYGNVTYPLDGDNVEALIDKLMDKMRENIKLKE
Sequences:
>Translated_317_residues MQNIIILDDMSYMRYRVKDLLEEKDIKVYETSTSFEFFNKLYEKKDNIDLIILELGLTREDGFEVVEKIREKNVDIPIVI LTKVNTRDAFAKVIREGISDYILKPFDNKVLLDRIVKTIKESKASKEEVSIGKKSKVQKIYISEDNENIDKDKEEFAKGK EIADFNGIEEELPEEFKIYFVDELNKAKTDNTKVSSVVFTLIKNTDEEEKIDVKESYITLTEVFYKGIKDIFKAPNFITK HGLLTFVAVLPNCNEEKVEDMKNRIQEKYKMLSLIYPQLSQYHVGYGNVTYPLDGDNVEALIDKLMDKMRENIKLKE >Mature_317_residues MQNIIILDDMSYMRYRVKDLLEEKDIKVYETSTSFEFFNKLYEKKDNIDLIILELGLTREDGFEVVEKIREKNVDIPIVI LTKVNTRDAFAKVIREGISDYILKPFDNKVLLDRIVKTIKESKASKEEVSIGKKSKVQKIYISEDNENIDKDKEEFAKGK EIADFNGIEEELPEEFKIYFVDELNKAKTDNTKVSSVVFTLIKNTDEEEKIDVKESYITLTEVFYKGIKDIFKAPNFITK HGLLTFVAVLPNCNEEKVEDMKNRIQEKYKMLSLIYPQLSQYHVGYGNVTYPLDGDNVEALIDKLMDKMRENIKLKE
Specific function: Member Of The Two-Component Regulatory System Kdpd/Kdpe Involved In The Regulation Of The Kdp Operon. [C]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37040; Mature: 37040
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNIIILDDMSYMRYRVKDLLEEKDIKVYETSTSFEFFNKLYEKKDNIDLIILELGLTRE CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCC DGFEVVEKIREKNVDIPIVILTKVNTRDAFAKVIREGISDYILKPFDNKVLLDRIVKTIK CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ESKASKEEVSIGKKSKVQKIYISEDNENIDKDKEEFAKGKEIADFNGIEEELPEEFKIYF HHCCCHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCHHHCCHHHEEEE VDELNKAKTDNTKVSSVVFTLIKNTDEEEKIDVKESYITLTEVFYKGIKDIFKAPNFITK EECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH HGLLTFVAVLPNCNEEKVEDMKNRIQEKYKMLSLIYPQLSQYHVGYGNVTYPLDGDNVEA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCCHHH LIDKLMDKMRENIKLKE HHHHHHHHHHHCCCCCC >Mature Secondary Structure MQNIIILDDMSYMRYRVKDLLEEKDIKVYETSTSFEFFNKLYEKKDNIDLIILELGLTRE CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCC DGFEVVEKIREKNVDIPIVILTKVNTRDAFAKVIREGISDYILKPFDNKVLLDRIVKTIK CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ESKASKEEVSIGKKSKVQKIYISEDNENIDKDKEEFAKGKEIADFNGIEEELPEEFKIYF HHCCCHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCHHHCCHHHEEEE VDELNKAKTDNTKVSSVVFTLIKNTDEEEKIDVKESYITLTEVFYKGIKDIFKAPNFITK EECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH HGLLTFVAVLPNCNEEKVEDMKNRIQEKYKMLSLIYPQLSQYHVGYGNVTYPLDGDNVEA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCCHHH LIDKLMDKMRENIKLKE HHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA