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The map label for this gene is yqjN [H]

Identifier: 170757301

GI number: 170757301

Start: 3155150

End: 3156781

Strand: Reverse

Name: yqjN [H]

Synonym: CLD_1635

Alternate gene names: 170757301

Gene position: 3156781-3155150 (Counterclockwise)

Preceding gene: 170754556

Following gene: 170755772

Centisome position: 79.75

GC content: 26.65

Gene sequence:

>1632_bases
ATGATGATGAGAGATAAAATATTTAAAACTTTAGATAGATTAGTAAAAATGCCTAGTATATCAGGAACAGAAAAAGAAAA
TTTAGCAGTAGATGAAATTTACAATATACTAATGGATATAGATTATTTTAGAAATAATAAGAGCAATGTAAAAGTACATA
ATATAGAAGGGGATATGCATAACAGATGCTTTTTAACAGCGTTGTTAGAAGGTAAGAAGCCATCAAAGGATATAATAATA
TTAACAGGACATTTAGATGTAGTAGATATAGATGAATTTGGCATTTTAAAAAATATAGCTTTTGACTATAAAGAATATAC
CAAAAGAGTATCAGATTTAGTATTGGATCAGGATTCCAAGAAGGATTTACATTCTAATGAGTGGATATTTGGTAGAGGCA
CAGCAGATATGAAATATGGACTAGCTCTTTATATAGAATTAATAAGAGAGTTATCAAGAGATAGAGATTTTAAAGGAAAT
ATACTGTTTTTAGCAGTACCGGGAGAAGAAAGTAACTCAGAAGGAATGTTAGGAGCAATACCTTATTTATCTAAATTAAA
AGAAGAGGGGTATAACTTTAAATCTTTATTTTTATCAGAATGTTGTATACCTAAATATGAGGGGGATAATGCCAAAAGAA
TATACATAGGATCTGTGGGTAAAATAATGCCAACTTTCTTTTGCGTAGGAAAAGCAACTCATGTAGGCAATCCTTTTGGA
GGATTAAATCCTAATTTATTAGTATCTGAAATAAATAAACTTATGGAATATAATGTAGAGCTAAGTGATAAATACGAAAA
AGATATAACACCACCACCAGTTTGTTTAAAACAATCAGATTTAAAAGAATTATATTCTGTACAAAACCCTGTATATGCAT
ATTCTTATTATAATTTATTAACTATACAAAAAACTCCAGAAGAAATCATGGAGAATTTAAAGGATATAGCAAGGGAAGCT
TCTTATAATACTCTTAAAATAATCAAAGAAAATTATAAAAAATATAAAGCAATATATGAAAGTAAATTAGAAGCAGACTT
AGATATAGAACCTAAAATCATAACTTTTGAAGAACTATATAAGGAAGTATTAAAGGAAAACAAAGATTTCGAAAAATATA
TAGAGACGGCTATAGAAAAATGGAAAGAAGAAAAATTAGATAATCAAACCATAGGAATAAAAATAATAAAAGAGACCTTT
GAACACTATAAATATCAACAGCCTATGATAATAATTGCATACAATGTACCTTATTATCCACATAGATATTTTGATAGTGA
AAATCCTAAATATACTAATTTGTTAAATTCATTAGATAACATGGGAATTTATGCAAAAGAAAAATATAATGTGAATATAG
AAAAAGAAAATTTCTTTATGGGTATAAGTGATTTAAGTTATACAGGTTTAGATGAAAAATTCAATATAGAAAGTATCTGC
AGAAATATGCCTGGTTTAGGTTATACATATAAATTTCCAGAAAAAGAACTAAAGAAATTTGATATACCATCTGTAGTATT
CGGAGGCTTTGGAAAGGATTTTCATAAATATACAGAAAGATTAAATATCCCATATTCTATGGATATAGTTCCAGAATTGT
ATATGTATATATTAAAAGAAATACTACAGTAG

Upstream 100 bases:

>100_bases
TAGATAGTATAGAATTTGGAAGGTTTACAGAACTTGAAGAAAAATATTTTGAAAAATTTGTACAAATCCTTGTAGAGAAT
ATAGATTGGAGTGTTAAATA

Downstream 100 bases:

>100_bases
TAAATTACGACTTAAAAGGAAGTTATACTACCCGTGGTTTAAAAAAGGGATATGTGGCGAGATCGGCAACTCACTTCAAT
AAGAGATTCTAACTTGTTTT

Product: M20 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MMMRDKIFKTLDRLVKMPSISGTEKENLAVDEIYNILMDIDYFRNNKSNVKVHNIEGDMHNRCFLTALLEGKKPSKDIII
LTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSKKDLHSNEWIFGRGTADMKYGLALYIELIRELSRDRDFKGN
ILFLAVPGEESNSEGMLGAIPYLSKLKEEGYNFKSLFLSECCIPKYEGDNAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
GLNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLLTIQKTPEEIMENLKDIAREA
SYNTLKIIKENYKKYKAIYESKLEADLDIEPKIITFEELYKEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETF
EHYKYQQPMIIIAYNVPYYPHRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
RNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMDIVPELYMYILKEILQ

Sequences:

>Translated_543_residues
MMMRDKIFKTLDRLVKMPSISGTEKENLAVDEIYNILMDIDYFRNNKSNVKVHNIEGDMHNRCFLTALLEGKKPSKDIII
LTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSKKDLHSNEWIFGRGTADMKYGLALYIELIRELSRDRDFKGN
ILFLAVPGEESNSEGMLGAIPYLSKLKEEGYNFKSLFLSECCIPKYEGDNAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
GLNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLLTIQKTPEEIMENLKDIAREA
SYNTLKIIKENYKKYKAIYESKLEADLDIEPKIITFEELYKEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETF
EHYKYQQPMIIIAYNVPYYPHRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
RNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMDIVPELYMYILKEILQ
>Mature_543_residues
MMMRDKIFKTLDRLVKMPSISGTEKENLAVDEIYNILMDIDYFRNNKSNVKVHNIEGDMHNRCFLTALLEGKKPSKDIII
LTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSKKDLHSNEWIFGRGTADMKYGLALYIELIRELSRDRDFKGN
ILFLAVPGEESNSEGMLGAIPYLSKLKEEGYNFKSLFLSECCIPKYEGDNAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
GLNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLLTIQKTPEEIMENLKDIAREA
SYNTLKIIKENYKKYKAIYESKLEADLDIEPKIITFEELYKEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETF
EHYKYQQPMIIIAYNVPYYPHRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
RNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMDIVPELYMYILKEILQ

Specific function: Unknown

COG id: COG4187

COG function: function code E; Arginine degradation protein (predicted deacylase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis rocB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002933
- InterPro:   IPR012166 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 63382; Mature: 63382

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMRDKIFKTLDRLVKMPSISGTEKENLAVDEIYNILMDIDYFRNNKSNVKVHNIEGDMH
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
NRCFLTALLEGKKPSKDIIILTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSK
CCEEEEHHHCCCCCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KDLHSNEWIFGRGTADMKYGLALYIELIRELSRDRDFKGNILFLAVPGEESNSEGMLGAI
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEHH
PYLSKLKEEGYNFKSLFLSECCIPKYEGDNAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHCCHHHCCCCCC
GLNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEE
TIQKTPEEIMENLKDIAREASYNTLKIIKENYKKYKAIYESKLEADLDIEPKIITFEELY
EEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHH
KEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETFEHYKYQQPMIIIAYNVPYYP
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
HRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
HHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCHHHHH
RNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMDIVPELYMYILKE
HCCCCCCEEEECCHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ILQ
HHC
>Mature Secondary Structure
MMMRDKIFKTLDRLVKMPSISGTEKENLAVDEIYNILMDIDYFRNNKSNVKVHNIEGDMH
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
NRCFLTALLEGKKPSKDIIILTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSK
CCEEEEHHHCCCCCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KDLHSNEWIFGRGTADMKYGLALYIELIRELSRDRDFKGNILFLAVPGEESNSEGMLGAI
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEHH
PYLSKLKEEGYNFKSLFLSECCIPKYEGDNAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHCCHHHCCCCCC
GLNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEE
TIQKTPEEIMENLKDIAREASYNTLKIIKENYKKYKAIYESKLEADLDIEPKIITFEELY
EEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHH
KEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETFEHYKYQQPMIIIAYNVPYYP
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
HRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
HHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCHHHHH
RNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMDIVPELYMYILKE
HCCCCCCEEEECCHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ILQ
HHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]