| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is uvrA [H]
Identifier: 170757273
GI number: 170757273
Start: 3013099
End: 3015357
Strand: Reverse
Name: uvrA [H]
Synonym: CLD_1750
Alternate gene names: 170757273
Gene position: 3015357-3013099 (Counterclockwise)
Preceding gene: 170757658
Following gene: 170754852
Centisome position: 76.18
GC content: 30.68
Gene sequence:
>2259_bases ATGGATATAAAAGAAAGTATTTATGTAGCAGGAGCTAGAGAAAAAAATTTGAAAAATATTGATATTAAGATACCCAAGAA AAAAATTACTGTGTTTACTGGGGTTTCTGGTTCAGGTAAATCATCTTTAGTTTTTGATACTATTGCTGCAGAATCACAAA GGCAGCTAAACGAGACCTATTCTAGCTTTATAAGGCATCGTTTGCCCCATTATGGACAACCGGATGTAGATTCAATTAAA AATTTATCTGTTGCTATTATAATAAATCAAAAAAGAATTGGTGGAAATTCAAGATCAACTGTGGGGACTATTACAGATAT AGCGCCATTATTAAGGCTCCTTTTTTCACGTATAGGAAAACCTTTTGTTGGATATTCTGATGTTTTTTCTTTTAATAATC CTACTGGAATGTGTATGCATTGTGATGGATTAGGGAAGGTTGATAGTATTAATATTGATAAATTATTAGATAAAAATAAA TCTCTTAATGAAGGAGCTATCTTGTTTCCTACCTTCAAACCTGGTGGATGGAGATTAAAGAGATATATACATTCAGGTTT GTTTGATAATGATAAAAAAATAAAAGATTATGATGAAAAAGAATTAGATTTACTTTTAAATAAAACTGATATAAAAATTG AAACAGATGATCCAGACTGGCCAAAGACATCTTTGTACGAAGGTCTTATACCAAGAATTGAAAGAAGTTTTTTAAAAAAA GAAGGTGGAGAAAGGGAGAAATATAAAAAAGAAATTAATAAAATTGTTACTAAAGAAATATGCCCTGTGTGTAAAGGGGC AAGATTAAATGAAAAAATATTATCTTGCAAAATCAATGGGAAAAATATTGCGGATTGTACAAAGATGCAAATAAATGATT TAATAATATTTATGAAAGAGATTAAAGAACAATCTGTCCAAACTGTATTAAAAGCCCTAATTAGCCGACTGGAGCATTTA GAGTACATAGGATTGGGATATTTAAGTTTAGACCGTGAAACTTCATCACTTTCCGGTGGTGAATCACAGAGAATTAAAAT GGTTAAACAATTGGGAAGCAGTTTAACAGGACTTACTTATATTTTTGATGAGCCTAGCATTGGATTACATCCACATGATA TTGGTAGAATAAATAAATTGTTAAAGATGCTGAGGGATAAAGGAAACACTGTTCTCATTGTTGAGCATGATCCTGATATA ATAAAGATTGCAGACTATATTATTGATATGGGCCCAAAGGCTGGTATAGAAGGTGGTAACATTGTTTATAAAGGAACCCC AGAAGGATTATTACAATCCAATACTCTAACAGGTAAGGCTTTGCAGTATAAACCACAAATAAAACTTCATACTAGGAAAG CAAAGGAATGGCTGTCAATTAAAAATGCAAATTTACATAATCTAAAAAATATTAACGTAGATATTCCTAAAGGTGTTATG ACTGTAGTAACAGGTGTAGCTGGCTCAGGTAAGAGTACTCTTATTAATAGATTGTTGCCCAAAATTTATCCAGAAACGAT TTTTATAGATCAAGGATCAATACATGCTTCAATACGTTCTAATATTGCCACTTATACAGGTATATTTGATTTTATAAGAA ATTTATTTGCTAAAGAAAATAATGTTAAATCCTCTCTTTTTAGTTTTAACTCAGAAGGAGCATGTCCAGAGTGCAAAGGA TTAGGTGTTACTTATACTGATTTAGCTTTTATGGATACTGTTATAAGTACCTGTGAAGTTTGCGAAGGAAATAGATTTAC GGATAAAGTATTAAATTTTAAATTTAGGGGAAAAAATATAAGCCAAGTTTTAAAAATGACTGTTGCTGAGGCAATTGACT TTTTTAAAGAAGATGAAATATATTTAGTGTTAAGAAGGTTAGTTGATGTAGGAATTGATTATATAACTTTAGGGCAACCA TTAAATACTTTATCAGGAGGAGAATTACAGAGATTAAAATTAGCTGCTCAATTAGATAGTAAAGGCAATATTTATGTATT GGATGAGCCTACAACAGGACTTCACATATCTGATATAACAAAGTTAGTGGCTATTATGAATAGGTTAGTTAATCAGGGAA GTACTTTAATTGTAATAGAGCATAATTTAGATATAATGACTCAAGCCGATTGGATAATTGACCTTGGTCCAGAGGCTGGA GAAAATGGTGGTAGAATTATGTTTGAAGGGCAACCAAAAGATATAATTACCAATGAGAATTCAATTACCGGGAAATATTT AAAAAAATATATTCTCTAA
Upstream 100 bases:
>100_bases TGAAATATACAAGTAGTAAAATATAGTTAACCTATTCATGCATTAACTTAGTTAATCATATTTCGATTAAAAGTATAAAT TATTTGGAGGTGAATACTTT
Downstream 100 bases:
>100_bases AAGAAAGGGTGAAGATAATGATTAGGGAGGAATTAGAAGAAAATTATATGCCTTTCCAATGTATGATTATTAGCAGTATT AATCGATTTAATCTGGAAGA
Product: putative excinuclease ABC, A subunit
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 752; Mature: 752
Protein sequence:
>752_residues MDIKESIYVAGAREKNLKNIDIKIPKKKITVFTGVSGSGKSSLVFDTIAAESQRQLNETYSSFIRHRLPHYGQPDVDSIK NLSVAIIINQKRIGGNSRSTVGTITDIAPLLRLLFSRIGKPFVGYSDVFSFNNPTGMCMHCDGLGKVDSINIDKLLDKNK SLNEGAILFPTFKPGGWRLKRYIHSGLFDNDKKIKDYDEKELDLLLNKTDIKIETDDPDWPKTSLYEGLIPRIERSFLKK EGGEREKYKKEINKIVTKEICPVCKGARLNEKILSCKINGKNIADCTKMQINDLIIFMKEIKEQSVQTVLKALISRLEHL EYIGLGYLSLDRETSSLSGGESQRIKMVKQLGSSLTGLTYIFDEPSIGLHPHDIGRINKLLKMLRDKGNTVLIVEHDPDI IKIADYIIDMGPKAGIEGGNIVYKGTPEGLLQSNTLTGKALQYKPQIKLHTRKAKEWLSIKNANLHNLKNINVDIPKGVM TVVTGVAGSGKSTLINRLLPKIYPETIFIDQGSIHASIRSNIATYTGIFDFIRNLFAKENNVKSSLFSFNSEGACPECKG LGVTYTDLAFMDTVISTCEVCEGNRFTDKVLNFKFRGKNISQVLKMTVAEAIDFFKEDEIYLVLRRLVDVGIDYITLGQP LNTLSGGELQRLKLAAQLDSKGNIYVLDEPTTGLHISDITKLVAIMNRLVNQGSTLIVIEHNLDIMTQADWIIDLGPEAG ENGGRIMFEGQPKDIITNENSITGKYLKKYIL
Sequences:
>Translated_752_residues MDIKESIYVAGAREKNLKNIDIKIPKKKITVFTGVSGSGKSSLVFDTIAAESQRQLNETYSSFIRHRLPHYGQPDVDSIK NLSVAIIINQKRIGGNSRSTVGTITDIAPLLRLLFSRIGKPFVGYSDVFSFNNPTGMCMHCDGLGKVDSINIDKLLDKNK SLNEGAILFPTFKPGGWRLKRYIHSGLFDNDKKIKDYDEKELDLLLNKTDIKIETDDPDWPKTSLYEGLIPRIERSFLKK EGGEREKYKKEINKIVTKEICPVCKGARLNEKILSCKINGKNIADCTKMQINDLIIFMKEIKEQSVQTVLKALISRLEHL EYIGLGYLSLDRETSSLSGGESQRIKMVKQLGSSLTGLTYIFDEPSIGLHPHDIGRINKLLKMLRDKGNTVLIVEHDPDI IKIADYIIDMGPKAGIEGGNIVYKGTPEGLLQSNTLTGKALQYKPQIKLHTRKAKEWLSIKNANLHNLKNINVDIPKGVM TVVTGVAGSGKSTLINRLLPKIYPETIFIDQGSIHASIRSNIATYTGIFDFIRNLFAKENNVKSSLFSFNSEGACPECKG LGVTYTDLAFMDTVISTCEVCEGNRFTDKVLNFKFRGKNISQVLKMTVAEAIDFFKEDEIYLVLRRLVDVGIDYITLGQP LNTLSGGELQRLKLAAQLDSKGNIYVLDEPTTGLHISDITKLVAIMNRLVNQGSTLIVIEHNLDIMTQADWIIDLGPEAG ENGGRIMFEGQPKDIITNENSITGKYLKKYIL >Mature_752_residues MDIKESIYVAGAREKNLKNIDIKIPKKKITVFTGVSGSGKSSLVFDTIAAESQRQLNETYSSFIRHRLPHYGQPDVDSIK NLSVAIIINQKRIGGNSRSTVGTITDIAPLLRLLFSRIGKPFVGYSDVFSFNNPTGMCMHCDGLGKVDSINIDKLLDKNK SLNEGAILFPTFKPGGWRLKRYIHSGLFDNDKKIKDYDEKELDLLLNKTDIKIETDDPDWPKTSLYEGLIPRIERSFLKK EGGEREKYKKEINKIVTKEICPVCKGARLNEKILSCKINGKNIADCTKMQINDLIIFMKEIKEQSVQTVLKALISRLEHL EYIGLGYLSLDRETSSLSGGESQRIKMVKQLGSSLTGLTYIFDEPSIGLHPHDIGRINKLLKMLRDKGNTVLIVEHDPDI IKIADYIIDMGPKAGIEGGNIVYKGTPEGLLQSNTLTGKALQYKPQIKLHTRKAKEWLSIKNANLHNLKNINVDIPKGVM TVVTGVAGSGKSTLINRLLPKIYPETIFIDQGSIHASIRSNIATYTGIFDFIRNLFAKENNVKSSLFSFNSEGACPECKG LGVTYTDLAFMDTVISTCEVCEGNRFTDKVLNFKFRGKNISQVLKMTVAEAIDFFKEDEIYLVLRRLVDVGIDYITLGQP LNTLSGGELQRLKLAAQLDSKGNIYVLDEPTTGLHISDITKLVAIMNRLVNQGSTLIVIEHNLDIMTQADWIIDLGPEAG ENGGRIMFEGQPKDIITNENSITGKYLKKYIL
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=708, Percent_Identity=36.0169491525424, Blast_Score=400, Evalue=1e-112,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 83944; Mature: 83944
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIKESIYVAGAREKNLKNIDIKIPKKKITVFTGVSGSGKSSLVFDTIAAESQRQLNETY CCCCCCEEEECCCCCCCCEEEEEECCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHH SSFIRHRLPHYGQPDVDSIKNLSVAIIINQKRIGGNSRSTVGTITDIAPLLRLLFSRIGK HHHHHHHCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC PFVGYSDVFSFNNPTGMCMHCDGLGKVDSINIDKLLDKNKSLNEGAILFPTFKPGGWRLK CCCCHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCHHHH RYIHSGLFDNDKKIKDYDEKELDLLLNKTDIKIETDDPDWPKTSLYEGLIPRIERSFLKK HHHHHCCCCCCCCCCCCCHHHHHEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH EGGEREKYKKEINKIVTKEICPVCKGARLNEKILSCKINGKNIADCTKMQINDLIIFMKE CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH IKEQSVQTVLKALISRLEHLEYIGLGYLSLDRETSSLSGGESQRIKMVKQLGSSLTGLTY HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEE IFDEPSIGLHPHDIGRINKLLKMLRDKGNTVLIVEHDPDIIKIADYIIDMGPKAGIEGGN EECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC IVYKGTPEGLLQSNTLTGKALQYKPQIKLHTRKAKEWLSIKNANLHNLKNINVDIPKGVM EEECCCCCHHHCCCCCCCCEEEECCCEEEEHHHHHHHHHHCCCCCCCCCCCCEECCCHHH TVVTGVAGSGKSTLINRLLPKIYPETIFIDQGSIHASIRSNIATYTGIFDFIRNLFAKEN HHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC NVKSSLFSFNSEGACPECKGLGVTYTDLAFMDTVISTCEVCEGNRFTDKVLNFKFRGKNI CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCH SQVLKMTVAEAIDFFKEDEIYLVLRRLVDVGIDYITLGQPLNTLSGGELQRLKLAAQLDS HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHEECCCC KGNIYVLDEPTTGLHISDITKLVAIMNRLVNQGSTLIVIEHNLDIMTQADWIIDLGPEAG CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEECCCCCC ENGGRIMFEGQPKDIITNENSITGKYLKKYIL CCCCEEEECCCCCCEECCCCCCCHHHHHHHCC >Mature Secondary Structure MDIKESIYVAGAREKNLKNIDIKIPKKKITVFTGVSGSGKSSLVFDTIAAESQRQLNETY CCCCCCEEEECCCCCCCCEEEEEECCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHH SSFIRHRLPHYGQPDVDSIKNLSVAIIINQKRIGGNSRSTVGTITDIAPLLRLLFSRIGK HHHHHHHCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC PFVGYSDVFSFNNPTGMCMHCDGLGKVDSINIDKLLDKNKSLNEGAILFPTFKPGGWRLK CCCCHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCHHHH RYIHSGLFDNDKKIKDYDEKELDLLLNKTDIKIETDDPDWPKTSLYEGLIPRIERSFLKK HHHHHCCCCCCCCCCCCCHHHHHEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH EGGEREKYKKEINKIVTKEICPVCKGARLNEKILSCKINGKNIADCTKMQINDLIIFMKE CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH IKEQSVQTVLKALISRLEHLEYIGLGYLSLDRETSSLSGGESQRIKMVKQLGSSLTGLTY HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEE IFDEPSIGLHPHDIGRINKLLKMLRDKGNTVLIVEHDPDIIKIADYIIDMGPKAGIEGGN EECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC IVYKGTPEGLLQSNTLTGKALQYKPQIKLHTRKAKEWLSIKNANLHNLKNINVDIPKGVM EEECCCCCHHHCCCCCCCCEEEECCCEEEEHHHHHHHHHHCCCCCCCCCCCCEECCCHHH TVVTGVAGSGKSTLINRLLPKIYPETIFIDQGSIHASIRSNIATYTGIFDFIRNLFAKEN HHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC NVKSSLFSFNSEGACPECKGLGVTYTDLAFMDTVISTCEVCEGNRFTDKVLNFKFRGKNI CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCH SQVLKMTVAEAIDFFKEDEIYLVLRRLVDVGIDYITLGQPLNTLSGGELQRLKLAAQLDS HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHEECCCC KGNIYVLDEPTTGLHISDITKLVAIMNRLVNQGSTLIVIEHNLDIMTQADWIIDLGPEAG CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEECCCCCC ENGGRIMFEGQPKDIITNENSITGKYLKKYIL CCCCEEEECCCCCCEECCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA