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The map label for this gene is ydeM [C]

Identifier: 170757201

GI number: 170757201

Start: 701018

End: 702370

Strand: Direct

Name: ydeM [C]

Synonym: CLD_0173

Alternate gene names: 170757201

Gene position: 701018-702370 (Clockwise)

Preceding gene: 170757602

Following gene: 170754580

Centisome position: 17.71

GC content: 28.9

Gene sequence:

>1353_bases
ATGAAAAAATCTAAATACAATAAAATAATTAAACTAGAAGATGGAAAAACTATAGCTTTTAATAGTGTTACTTGTGCGCT
CGCAGAAGTAGATAAGGATTTTTTAGATGTATTAGAAAACATAGAAAATTTAGATATAGAAAATTTAGATAAAAAAAAGA
GAGAGTTAGTTGAAAACATGTCAGAGGGTAATTATATAGTTCATGATGATATGGATGAATTAAAGTTATTAAAATATAGA
AATTACAATGGAAAGTTTTCAAGTGGCGCATTAGGATTAGTTATTGCTCCTACACTAGCTTGTAATTTTGCTTGTCCTTA
TTGTTATGAAACTCCAAAAGCAGGCCTTATGGATAAAAAAGTTCAAGATAGTTTAATAGAAATGATAGAAGAAAACGCTA
AAAATAAAAATGATATAAGTATAACCTGGTATGGTGGAGAACCCTTATTAGCAAAAGAAATGATATTTGATTTTTCTCAA
AGGGCTATAGAAATATGTGAAAGAGAAAATGTTAAATATAGTTCATATATTGTAACCAATGGATACTTAATAGATGAAGA
AACTATAGAAAATATGAAAAAAGCTAAAATAACAGGGGCGCAAATTACAGTGGATGGCCCTCCAAGTATTCATAATAAAA
GAAGAAAATTAAAGAATTCAGATGAGGAAACTTTTACTACAATAATGGCTAATGTAAAAAAACTTATAGATGGTGGAATT
AAAAATATAGCTATTAGAATAAATGTAGATAAAACAAATGTTGATCATGTGGAGGAGTTATTAGATATATTAGAAGAAAA
TGGATTAAAAGATGTTATTGTTAATCTAGGACATGTTACTGCATATACAGATAGTTGTAACGGAATTGCAAATAATTGTT
TAAACACAAAAGAATATGCAAAAAGTGATACTAAATATCAGAAAGTACTTTTTGAAAGAGGATATAAGGTGGCAGGAGCA
TATCCTTTCTATCCAAGCGTAAAAGCAAATTATTGTTGTGCTGATAATGTTGGAGCTTATGTAATTGATTCTGAAGGATA
TATGTATAAATGTTGGAATGATGTTGGAAATGTTGATAGGGCAGTTGGAAATGTTACTACAATTAAAGACAAAGTAGACG
AAAAAATGTATGCAAGAAATATGGAATATATATTATGGTCTCCATTTGAATATGAAGAATGTAAGGAGTGTAGCATATTA
CCAATATGCATGGGGGGATGTCCATATAAAGGAACCATGAAGGAGAAGCCTGAATGTGAAAAATGGATATATAACCTTGA
AGAAACAATAATATCAACATATAATCAAAAAAATGGGGCTGAATGTAATCAGCAAGGATGTTGCTGTGAATAA

Upstream 100 bases:

>100_bases
ATAACTAAATTATATAGATACAAATAACGCAATAATAAAATAAATTTAGATTATTATACATTAGATTATTAAAAATTTAA
CAAAGCAGGGGGCAAAAATT

Downstream 100 bases:

>100_bases
TCTTAATTTTCATATTAAAGATTTAAGAGTATTAAGAGATATTGAGAATTATTTAGATTTTTATAATAGAGCAATGAACA
TAAAAAATGTATTTAATTTT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Radical SAM Family Protein; Arylsulfatase Regulatory Protein; Transcriptional Regulator; Arylsulfatase Regulator Fe-S Oxidoreductase; AstB/ChuR-Related Protein; Radical Sam Domain Protein; Heme Biosynthesis Related Protein; Radical Sam Family Protein; Radical SAM-Family Protein; Arylsulfatase-Activating AtsB; Heme Biosynthesis Family Protein; Transcriptional Regulatory Protein; Regulatory Protein; Metallo Cofactor Biosynthesis Protein; Radical SAM Superfamily Protein; Heme Biosynthesis; Fe-S Oxidoreductase; Radical SAM

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDKKKRELVENMSEGNYIVHDDMDELKLLKYR
NYNGKFSSGALGLVIAPTLACNFACPYCYETPKAGLMDKKVQDSLIEMIEENAKNKNDISITWYGGEPLLAKEMIFDFSQ
RAIEICERENVKYSSYIVTNGYLIDEETIENMKKAKITGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
KNIAIRINVDKTNVDHVEELLDILEENGLKDVIVNLGHVTAYTDSCNGIANNCLNTKEYAKSDTKYQKVLFERGYKVAGA
YPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNVDRAVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSIL
PICMGGCPYKGTMKEKPECEKWIYNLEETIISTYNQKNGAECNQQGCCCE

Sequences:

>Translated_450_residues
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDKKKRELVENMSEGNYIVHDDMDELKLLKYR
NYNGKFSSGALGLVIAPTLACNFACPYCYETPKAGLMDKKVQDSLIEMIEENAKNKNDISITWYGGEPLLAKEMIFDFSQ
RAIEICERENVKYSSYIVTNGYLIDEETIENMKKAKITGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
KNIAIRINVDKTNVDHVEELLDILEENGLKDVIVNLGHVTAYTDSCNGIANNCLNTKEYAKSDTKYQKVLFERGYKVAGA
YPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNVDRAVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSIL
PICMGGCPYKGTMKEKPECEKWIYNLEETIISTYNQKNGAECNQQGCCCE
>Mature_450_residues
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDKKKRELVENMSEGNYIVHDDMDELKLLKYR
NYNGKFSSGALGLVIAPTLACNFACPYCYETPKAGLMDKKVQDSLIEMIEENAKNKNDISITWYGGEPLLAKEMIFDFSQ
RAIEICERENVKYSSYIVTNGYLIDEETIENMKKAKITGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
KNIAIRINVDKTNVDHVEELLDILEENGLKDVIVNLGHVTAYTDSCNGIANNCLNTKEYAKSDTKYQKVLFERGYKVAGA
YPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNVDRAVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSIL
PICMGGCPYKGTMKEKPECEKWIYNLEETIISTYNQKNGAECNQQGCCCE

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081923, Length=343, Percent_Identity=23.0320699708455, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51091; Mature: 51091

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDKKKRELVENM
CCCCCCCCEEEECCCCEEEECCHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
SEGNYIVHDDMDELKLLKYRNYNGKFSSGALGLVIAPTLACNFACPYCYETPKAGLMDKK
CCCCEEEECCHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCHHH
VQDSLIEMIEENAKNKNDISITWYGGEPLLAKEMIFDFSQRAIEICERENVKYSSYIVTN
HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
GYLIDEETIENMKKAKITGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
CEEECHHHHHHHHHHEECCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
KNIAIRINVDKTNVDHVEELLDILEENGLKDVIVNLGHVTAYTDSCNGIANNCLNTKEYA
CEEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCHHHHHCCCCHHHH
KSDTKYQKVLFERGYKVAGAYPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNVDR
HCCHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCEEEECCCCCEEEEHHHHCHHHH
AVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSILPICMGGCPYKGTMKEKPECE
HHCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
KWIYNLEETIISTYNQKNGAECNQQGCCCE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDKKKRELVENM
CCCCCCCCEEEECCCCEEEECCHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
SEGNYIVHDDMDELKLLKYRNYNGKFSSGALGLVIAPTLACNFACPYCYETPKAGLMDKK
CCCCEEEECCHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCHHH
VQDSLIEMIEENAKNKNDISITWYGGEPLLAKEMIFDFSQRAIEICERENVKYSSYIVTN
HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
GYLIDEETIENMKKAKITGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
CEEECHHHHHHHHHHEECCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
KNIAIRINVDKTNVDHVEELLDILEENGLKDVIVNLGHVTAYTDSCNGIANNCLNTKEYA
CEEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCHHHHHCCCCHHHH
KSDTKYQKVLFERGYKVAGAYPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNVDR
HCCHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCEEEECCCCCEEEEHHHHCHHHH
AVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSILPICMGGCPYKGTMKEKPECE
HHCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
KWIYNLEETIISTYNQKNGAECNQQGCCCE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA