| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is 170757132
Identifier: 170757132
GI number: 170757132
Start: 684669
End: 685430
Strand: Direct
Name: 170757132
Synonym: CLD_0190
Alternate gene names: NA
Gene position: 684669-685430 (Clockwise)
Preceding gene: 170755793
Following gene: 170757868
Centisome position: 17.3
GC content: 24.67
Gene sequence:
>762_bases ATGGGAAAGCTTATAAAATATAATTTGAAATGTTATTATAAAGAAATCTTAATATTACTGAGTTTGATAGTTTTATCTAA TTTAGTCCTTTTTTATAAAATAAATAAATGGCCAAGGGAAATAATATTTGGATTATCAATAATGATACTTTCTTTTGCCT GTTTAGTAGTTTTAATATGGAATATAAATATGTTCAGTAAGGATCTTTACTCAGATACCTCTTATTTGATATTTACATTG CCAGTTAAGGGAAGAAGTATATTAGGAGCTAAATTAATAACATCAATTATTCAAGTCATACTAGTAAATATAGTAGCAGG AATATTCATATATATTAATTTTAAAAATAGTTCTTTAGCACATCAAGATATTGTAGCATATTTAACCTTTAAAAATATTT CTATTGCAAGTATTATAGCAATGTTTCACTATATAAGTTTTTTACTAACTATATATGTATCTGTAGCATTATCTAGAGTT GCTATTAGAAAGAAGAAGCTTGGAAAATTAGGATCATTCGGTATATTTGTTGGTATATGTATAATTGTGGGAAAATTATC TATGTGGATTACTAAAATTTTTCCTCAAACTATAAAATTAGCTATAAATCCAAATACAATTATATCAGGTACAGTGGATG GGGCAAAGTTTTCTTTGAATTTTGTGAATGTTAATATAGCTTCTACAATATTTGATATAGTGTTTGCAGTGGCATTATTT ATTGTAGTATCATATTTGTTACAAGAGAAAGTTGAAATTTAA
Upstream 100 bases:
>100_bases TTATATCTGAGGGAGAGATAGCATTAAGCGGTATAGCAGAGGAACTTAGAATGGAAAAAGGAATGTCTATAGATGAATTA TATAAGGAGGTATTTCAATA
Downstream 100 bases:
>100_bases TATGTTTTTGTATTAGTAAGAATGACAGAGGGTGTCTTAAAATTAAATTTATTTTAAGGCACCCTTTATTCGATGACTAC CCGCTCTAATATTCCCATCT
Product: putative ABC transporter, permease protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MGKLIKYNLKCYYKEILILLSLIVLSNLVLFYKINKWPREIIFGLSIMILSFACLVVLIWNINMFSKDLYSDTSYLIFTL PVKGRSILGAKLITSIIQVILVNIVAGIFIYINFKNSSLAHQDIVAYLTFKNISIASIIAMFHYISFLLTIYVSVALSRV AIRKKKLGKLGSFGIFVGICIIVGKLSMWITKIFPQTIKLAINPNTIISGTVDGAKFSLNFVNVNIASTIFDIVFAVALF IVVSYLLQEKVEI
Sequences:
>Translated_253_residues MGKLIKYNLKCYYKEILILLSLIVLSNLVLFYKINKWPREIIFGLSIMILSFACLVVLIWNINMFSKDLYSDTSYLIFTL PVKGRSILGAKLITSIIQVILVNIVAGIFIYINFKNSSLAHQDIVAYLTFKNISIASIIAMFHYISFLLTIYVSVALSRV AIRKKKLGKLGSFGIFVGICIIVGKLSMWITKIFPQTIKLAINPNTIISGTVDGAKFSLNFVNVNIASTIFDIVFAVALF IVVSYLLQEKVEI >Mature_252_residues GKLIKYNLKCYYKEILILLSLIVLSNLVLFYKINKWPREIIFGLSIMILSFACLVVLIWNINMFSKDLYSDTSYLIFTLP VKGRSILGAKLITSIIQVILVNIVAGIFIYINFKNSSLAHQDIVAYLTFKNISIASIIAMFHYISFLLTIYVSVALSRVA IRKKKLGKLGSFGIFVGICIIVGKLSMWITKIFPQTIKLAINPNTIISGTVDGAKFSLNFVNVNIASTIFDIVFAVALFI VVSYLLQEKVEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28427; Mature: 28296
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKLIKYNLKCYYKEILILLSLIVLSNLVLFYKINKWPREIIFGLSIMILSFACLVVLIW CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHH NINMFSKDLYSDTSYLIFTLPVKGRSILGAKLITSIIQVILVNIVAGIFIYINFKNSSLA CCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCH HQDIVAYLTFKNISIASIIAMFHYISFLLTIYVSVALSRVAIRKKKLGKLGSFGIFVGIC HHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH IIVGKLSMWITKIFPQTIKLAINPNTIISGTVDGAKFSLNFVNVNIASTIFDIVFAVALF HHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHHH IVVSYLLQEKVEI HHHHHHHHHHCCC >Mature Secondary Structure GKLIKYNLKCYYKEILILLSLIVLSNLVLFYKINKWPREIIFGLSIMILSFACLVVLIW CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHH NINMFSKDLYSDTSYLIFTLPVKGRSILGAKLITSIIQVILVNIVAGIFIYINFKNSSLA CCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCH HQDIVAYLTFKNISIASIIAMFHYISFLLTIYVSVALSRVAIRKKKLGKLGSFGIFVGIC HHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH IIVGKLSMWITKIFPQTIKLAINPNTIISGTVDGAKFSLNFVNVNIASTIFDIVFAVALF HHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHHH IVVSYLLQEKVEI HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA