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The map label for this gene is yddE [C]

Identifier: 170757131

GI number: 170757131

Start: 949783

End: 950652

Strand: Direct

Name: yddE [C]

Synonym: CLD_3734

Alternate gene names: 170757131

Gene position: 949783-950652 (Clockwise)

Preceding gene: 170754494

Following gene: 170756843

Centisome position: 24.0

GC content: 33.91

Gene sequence:

>870_bases
ATGAAGGTAAAAGCTTATACATTAAATTCATTTGCAAAATGCATAGAGGGAGGAAATCCTGCTGGAGTTGTGATTAATGC
AGACGATCTATCAGAAGATAACATGAAAAAGGTTGCAGGTATAATTGGTTTTAGTGAGACTGCTTTTGTCATGAATTCAG
ACTTGGCAGACTTCAAGGTGAGATTTTTTACACCTAATGAAGAAGTTGATATTTGTGGTCATGCCACGATAGCAACCTTC
AGTACACTCTTAAGCCAAGGACGCATTGAACCAGGTAAATACTTTCAAGAAACCAAGGCCGGAGTTTTAAGTGTGGAATT
AAAGGAAGATTTATCAATTATGATGAATCAAAATACTCCAAGCTACTATGAAACAATATGTAAACAAGAAATTGCAGATT
CGCTGAACATTACTACAGCTGAAATGAGTGAGGAGCTACCAATACAAATCGTATCTACAGGCCTTAGGGATATACTTATA
CCTATTAAAAATATAGATATGGTAAATGCTATAAAACCAAATTTTGAAAAGGTATCAAGAATTAGCAGTAAATATAATAC
AATTGGTTATCATATTTTCACACTTGAATCACTTAACGGCTCAAATGCCTACTGTAGGAATTTGGCACCCCTCTATGGAA
TTCCTGAAGAATCTGCAACTGGTACATCCAATGGTGCCCTTGCATGTTATCTATTTAAATATGGTAAAATTAAATCTGAC
AATACTAATCATATAGTTATAGAGCAAGGTTATTCAATGGAAAAGCCTTCAGAAATAATTGTTTCCTTGATAACTGAAGG
CAAAGAAGTTATTGAAGTTAAGGTTGGTGGAAAAGCATTAAATTTGTCTGAAATAGAGGTTGAAATATAA

Upstream 100 bases:

>100_bases
TAATTACTATTAATTAATTTAAAATAGTAACTAAATGTGATACATTAGTAATTTAGTACAAATAAAAAATCCATGCAGAA
ATTTTAAGGAGAAATGTTTT

Downstream 100 bases:

>100_bases
CATCTAATCTAAAAGTCACTAATGAAGTACAAAGTATAGGAAGAAAAGAAATCAATAGATTCACATTCTTCTTGTTTAAT
GAAATGATTGAAAAAACGAA

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKVKAYTLNSFAKCIEGGNPAGVVINADDLSEDNMKKVAGIIGFSETAFVMNSDLADFKVRFFTPNEEVDICGHATIATF
STLLSQGRIEPGKYFQETKAGVLSVELKEDLSIMMNQNTPSYYETICKQEIADSLNITTAEMSEELPIQIVSTGLRDILI
PIKNIDMVNAIKPNFEKVSRISSKYNTIGYHIFTLESLNGSNAYCRNLAPLYGIPEESATGTSNGALACYLFKYGKIKSD
NTNHIVIEQGYSMEKPSEIIVSLITEGKEVIEVKVGGKALNLSEIEVEI

Sequences:

>Translated_289_residues
MKVKAYTLNSFAKCIEGGNPAGVVINADDLSEDNMKKVAGIIGFSETAFVMNSDLADFKVRFFTPNEEVDICGHATIATF
STLLSQGRIEPGKYFQETKAGVLSVELKEDLSIMMNQNTPSYYETICKQEIADSLNITTAEMSEELPIQIVSTGLRDILI
PIKNIDMVNAIKPNFEKVSRISSKYNTIGYHIFTLESLNGSNAYCRNLAPLYGIPEESATGTSNGALACYLFKYGKIKSD
NTNHIVIEQGYSMEKPSEIIVSLITEGKEVIEVKVGGKALNLSEIEVEI
>Mature_289_residues
MKVKAYTLNSFAKCIEGGNPAGVVINADDLSEDNMKKVAGIIGFSETAFVMNSDLADFKVRFFTPNEEVDICGHATIATF
STLLSQGRIEPGKYFQETKAGVLSVELKEDLSIMMNQNTPSYYETICKQEIADSLNITTAEMSEELPIQIVSTGLRDILI
PIKNIDMVNAIKPNFEKVSRISSKYNTIGYHIFTLESLNGSNAYCRNLAPLYGIPEESATGTSNGALACYLFKYGKIKSD
NTNHIVIEQGYSMEKPSEIIVSLITEGKEVIEVKVGGKALNLSEIEVEI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=254, Percent_Identity=25.5905511811024, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI74316009, Length=254, Percent_Identity=25.5905511811024, Blast_Score=75, Evalue=8e-14,
Organism=Escherichia coli, GI1787737, Length=300, Percent_Identity=31.3333333333333, Blast_Score=140, Evalue=9e-35,
Organism=Caenorhabditis elegans, GI17542160, Length=271, Percent_Identity=27.3062730627306, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17542154, Length=271, Percent_Identity=27.3062730627306, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321818, Length=282, Percent_Identity=23.758865248227, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31726; Mature: 31726

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKAYTLNSFAKCIEGGNPAGVVINADDLSEDNMKKVAGIIGFSETAFVMNSDLADFKV
CEEEEEEHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEE
RFFTPNEEVDICGHATIATFSTLLSQGRIEPGKYFQETKAGVLSVELKEDLSIMMNQNTP
EEECCCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCEEEEECCCCC
SYYETICKQEIADSLNITTAEMSEELPIQIVSTGLRDILIPIKNIDMVNAIKPNFEKVSR
HHHHHHHHHHHHHHCCEEHHHHCCCCCHHHHHCCHHHEEEECCCCCCHHCCCCCHHHHHH
ISSKYNTIGYHIFTLESLNGSNAYCRNLAPLYGIPEESATGTSNGALACYLFKYGKIKSD
HHHHCCEEEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCC
NTNHIVIEQGYSMEKPSEIIVSLITEGKEVIEVKVGGKALNLSEIEVEI
CCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEECEEEEEEEC
>Mature Secondary Structure
MKVKAYTLNSFAKCIEGGNPAGVVINADDLSEDNMKKVAGIIGFSETAFVMNSDLADFKV
CEEEEEEHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEE
RFFTPNEEVDICGHATIATFSTLLSQGRIEPGKYFQETKAGVLSVELKEDLSIMMNQNTP
EEECCCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCEEEEECCCCC
SYYETICKQEIADSLNITTAEMSEELPIQIVSTGLRDILIPIKNIDMVNAIKPNFEKVSR
HHHHHHHHHHHHHHCCEEHHHHCCCCCHHHHHCCHHHEEEECCCCCCHHCCCCCHHHHHH
ISSKYNTIGYHIFTLESLNGSNAYCRNLAPLYGIPEESATGTSNGALACYLFKYGKIKSD
HHHHCCEEEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCC
NTNHIVIEQGYSMEKPSEIIVSLITEGKEVIEVKVGGKALNLSEIEVEI
CCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEECEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]