| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756952
Identifier: 170756952
GI number: 170756952
Start: 3271340
End: 3272425
Strand: Reverse
Name: 170756952
Synonym: CLD_1522
Alternate gene names: NA
Gene position: 3272425-3271340 (Counterclockwise)
Preceding gene: 170755687
Following gene: 170757762
Centisome position: 82.67
GC content: 28.55
Gene sequence:
>1086_bases ATGAGTGAATTTTTTAATGTAACTTTGGACAAGGATATAATTTTAGATGATAGTGTAATTTCTAATAAAACTGGATGGTC AAGTGAGAAAATACAAAAGGAAATAATAGATAAAAGAATTACAAAATTTGAGGAGCTTGAGGATGTAGATGTTACTAATA AGAAAAATAAACAATTAGTAGCTTATTCAGAGGAAACAGGAAAGTTTACAACTATTGATGGTATAGATGCAGGAGAAATA GTTGGCGCAGGGATGAAACAAATATCTAAAATGGGTATAGTGGGAAGTGCCGAAACACCTAGAATCGTTAACATCCCTGT TAACACAGTAGATTTTAAAGTGCCTCGTGTGAATGTTTTGAGATATGATACAGAAAATACACAGGATTTAATATCAGTTA AAAACGAATTTACTAATGATGAGAGTAATGATTTTATTGATGACAAAATGATGACATTTGATGGTAAAGCACATTTAGAA ATAAATCATATAAGTGATTTTGAGGTTATTCAAGATGCAGAAAGCTTTACAGAATATAGTGTTAATGTGGATAAAACATT ATTTAAAAAAATAGAAGGCTTTGAAACATTTGAAGATGGAGTTATTCAAAAATTAAAGACAAAGGCTATTCCATTTGATC GTTTACTTATTCCTAAAGGTGATATGAATTTAAGTAATGTAGATCATATAGATTATTTTAGATTAACTGCTAATGGTAAC AATATACGAATAGTTTGTAGTGTGGATAGCGGTAATACGTGGAAGACTTTTAGTGGAGAAAAATGGGTAAATGTTAATTT AAATGTAGATGATGTAAGAAAAAATGGGATGAATATTGCTACCTTTAATGCTATTAATGATGTGTTCTGGAATGAATTAG TTACTACTAAAAAGATAAGATTTGCTTATTTATTTAGTATGGACAATATAACAGATATTGAAGAGATAGATAAACTAGAT TTGCAATATGATGGTGTTGGAAGATGGAAACAGGTTAAAGAAGATTTGTATGAAGTTATTTATGCTAGTAATACACTATT GCAAGTAGAATGTAAGTTTAGTGGAGATATTAAAATTAACTATTAA
Upstream 100 bases:
>100_bases AAAGTAAAGGTATATATGTAAAAATAACTAAAAATGCAGAAAATCATAATTTTGCAGTTAGAGATTTTCACTTAGTTATT AGTGAATAGGAGGTGGCTTA
Downstream 100 bases:
>100_bases ATTATTTTATTAAATAGATTGGAGTGATTTTTTTGGGAATAATTTTTCAGGATGCATTTGATACAGGAGCGGTATTAGAT AAAAATAAATGGGAAATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MSEFFNVTLDKDIILDDSVISNKTGWSSEKIQKEIIDKRITKFEELEDVDVTNKKNKQLVAYSEETGKFTTIDGIDAGEI VGAGMKQISKMGIVGSAETPRIVNIPVNTVDFKVPRVNVLRYDTENTQDLISVKNEFTNDESNDFIDDKMMTFDGKAHLE INHISDFEVIQDAESFTEYSVNVDKTLFKKIEGFETFEDGVIQKLKTKAIPFDRLLIPKGDMNLSNVDHIDYFRLTANGN NIRIVCSVDSGNTWKTFSGEKWVNVNLNVDDVRKNGMNIATFNAINDVFWNELVTTKKIRFAYLFSMDNITDIEEIDKLD LQYDGVGRWKQVKEDLYEVIYASNTLLQVECKFSGDIKINY
Sequences:
>Translated_361_residues MSEFFNVTLDKDIILDDSVISNKTGWSSEKIQKEIIDKRITKFEELEDVDVTNKKNKQLVAYSEETGKFTTIDGIDAGEI VGAGMKQISKMGIVGSAETPRIVNIPVNTVDFKVPRVNVLRYDTENTQDLISVKNEFTNDESNDFIDDKMMTFDGKAHLE INHISDFEVIQDAESFTEYSVNVDKTLFKKIEGFETFEDGVIQKLKTKAIPFDRLLIPKGDMNLSNVDHIDYFRLTANGN NIRIVCSVDSGNTWKTFSGEKWVNVNLNVDDVRKNGMNIATFNAINDVFWNELVTTKKIRFAYLFSMDNITDIEEIDKLD LQYDGVGRWKQVKEDLYEVIYASNTLLQVECKFSGDIKINY >Mature_360_residues SEFFNVTLDKDIILDDSVISNKTGWSSEKIQKEIIDKRITKFEELEDVDVTNKKNKQLVAYSEETGKFTTIDGIDAGEIV GAGMKQISKMGIVGSAETPRIVNIPVNTVDFKVPRVNVLRYDTENTQDLISVKNEFTNDESNDFIDDKMMTFDGKAHLEI NHISDFEVIQDAESFTEYSVNVDKTLFKKIEGFETFEDGVIQKLKTKAIPFDRLLIPKGDMNLSNVDHIDYFRLTANGNN IRIVCSVDSGNTWKTFSGEKWVNVNLNVDDVRKNGMNIATFNAINDVFWNELVTTKKIRFAYLFSMDNITDIEEIDKLDL QYDGVGRWKQVKEDLYEVIYASNTLLQVECKFSGDIKINY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41275; Mature: 41144
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEFFNVTLDKDIILDDSVISNKTGWSSEKIQKEIIDKRITKFEELEDVDVTNKKNKQLV CCCCEEEEECCCEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE AYSEETGKFTTIDGIDAGEIVGAGMKQISKMGIVGSAETPRIVNIPVNTVDFKVPRVNVL EEECCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCEEEEE RYDTENTQDLISVKNEFTNDESNDFIDDKMMTFDGKAHLEINHISDFEVIQDAESFTEYS EECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEECCCCHHHHHHHHHHHHEE VNVDKTLFKKIEGFETFEDGVIQKLKTKAIPFDRLLIPKGDMNLSNVDHIDYFRLTANGN CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECCC NIRIVCSVDSGNTWKTFSGEKWVNVNLNVDDVRKNGMNIATFNAINDVFWNELVTTKKIR EEEEEEEECCCCCEEEECCCEEEEEECCHHHHHHCCCEEEEEHHHHHHHHHHHHHHHEEE FAYLFSMDNITDIEEIDKLDLQYDGVGRWKQVKEDLYEVIYASNTLLQVECKFSGDIKIN EEEEEECCCCCCHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEE Y C >Mature Secondary Structure SEFFNVTLDKDIILDDSVISNKTGWSSEKIQKEIIDKRITKFEELEDVDVTNKKNKQLV CCCEEEEECCCEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE AYSEETGKFTTIDGIDAGEIVGAGMKQISKMGIVGSAETPRIVNIPVNTVDFKVPRVNVL EEECCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCEEEEE RYDTENTQDLISVKNEFTNDESNDFIDDKMMTFDGKAHLEINHISDFEVIQDAESFTEYS EECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEECCCCHHHHHHHHHHHHEE VNVDKTLFKKIEGFETFEDGVIQKLKTKAIPFDRLLIPKGDMNLSNVDHIDYFRLTANGN CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECCC NIRIVCSVDSGNTWKTFSGEKWVNVNLNVDDVRKNGMNIATFNAINDVFWNELVTTKKIR EEEEEEEECCCCCEEEECCCEEEEEECCHHHHHHCCCEEEEEHHHHHHHHHHHHHHHEEE FAYLFSMDNITDIEEIDKLDLQYDGVGRWKQVKEDLYEVIYASNTLLQVECKFSGDIKIN EEEEEECCCCCCHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEE Y C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA