| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is nudG [H]
Identifier: 170756877
GI number: 170756877
Start: 779218
End: 779616
Strand: Reverse
Name: nudG [H]
Synonym: CLD_0106
Alternate gene names: 170756877
Gene position: 779616-779218 (Counterclockwise)
Preceding gene: 170755518
Following gene: 170755788
Centisome position: 19.7
GC content: 31.08
Gene sequence:
>399_bases ATGAAAAAGTTAATTAAAGTTGTTGGTGCTATTATTGAAAATGAAAATAATGAAATCTTATGTGCCTTAAGATCAACTAA AATGTCTCTTCCTAACCTATGGGAATTTCCTGGCGGTAAAATCGAAAAAGGTGAATCTTTAGCTGATGCTATAGTTCGCG AAATTAAAGAAGAGCTTGACTGTACTATAAGCTTTATAGATGTTTTTAATGAAAACACTCATGAATATGATAAATTTATA GTTAATTTGACAACTGCTAGATGTAAATTAATAGAAGGGAAACCTACTGCTAATGAACACGATAAGCTTATTTGGCTTTC TAAAGAAAATTTAATTTCCTTAAATTGGGCTCCTGCTGATATTCCCGCTGTGGAGCAATTAGCTAAAGAAAAAATGTAG
Upstream 100 bases:
>100_bases AAAAAATTATATCCAATAACTCTTATCCAAATATACATTAAGCTTGTATTATTGACTTAAACAATGTTATTTAGTTAAAA TGTTATTGGAGGTGAAATAC
Downstream 100 bases:
>100_bases CACCGCTAATAATAGTGCTACATCTTTTTCTTTATATGTCTATGATATTACATAATCATAAATATCTTCTCTTACTTTCG TAATTAATTTATATCTTATT
Product: putative mutator mutT protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 132; Mature: 132
Protein sequence:
>132_residues MKKLIKVVGAIIENENNEILCALRSTKMSLPNLWEFPGGKIEKGESLADAIVREIKEELDCTISFIDVFNENTHEYDKFI VNLTTARCKLIEGKPTANEHDKLIWLSKENLISLNWAPADIPAVEQLAKEKM
Sequences:
>Translated_132_residues MKKLIKVVGAIIENENNEILCALRSTKMSLPNLWEFPGGKIEKGESLADAIVREIKEELDCTISFIDVFNENTHEYDKFI VNLTTARCKLIEGKPTANEHDKLIWLSKENLISLNWAPADIPAVEQLAKEKM >Mature_132_residues MKKLIKVVGAIIENENNEILCALRSTKMSLPNLWEFPGGKIEKGESLADAIVREIKEELDCTISFIDVFNENTHEYDKFI VNLTTARCKLIEGKPTANEHDKLIWLSKENLISLNWAPADIPAVEQLAKEKM
Specific function: Specific for pyrimidine substrates. Acts on 5-methyl- dCTP, CTP and dCTP in decreasing order [H]
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
Organism=Escherichia coli, GI1788056, Length=123, Percent_Identity=38.2113821138211, Blast_Score=84, Evalue=2e-18, Organism=Escherichia coli, GI1786288, Length=129, Percent_Identity=36.4341085271318, Blast_Score=78, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020476 - InterPro: IPR020084 - InterPro: IPR000086 - InterPro: IPR015797 [H]
Pfam domain/function: PF00293 NUDIX [H]
EC number: 3.6.1.-
Molecular weight: Translated: 14968; Mature: 14968
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLIKVVGAIIENENNEILCALRSTKMSLPNLWEFPGGKIEKGESLADAIVREIKEELD CHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC CTISFIDVFNENTHEYDKFIVNLTTARCKLIEGKPTANEHDKLIWLSKENLISLNWAPAD CCHHHHHHHCCCCHHHHHHHEEEEHHEEEEECCCCCCCCCCCEEEEECCCEEEECCCCCC IPAVEQLAKEKM CHHHHHHHHHCC >Mature Secondary Structure MKKLIKVVGAIIENENNEILCALRSTKMSLPNLWEFPGGKIEKGESLADAIVREIKEELD CHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC CTISFIDVFNENTHEYDKFIVNLTTARCKLIEGKPTANEHDKLIWLSKENLISLNWAPAD CCHHHHHHHCCCCHHHHHHHEEEEHHEEEEECCCCCCCCCCCEEEEECCCEEEECCCCCC IPAVEQLAKEKM CHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Fe; Mn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 11053429 [H]