Click here to switch to the map view.

The map label for this gene is yulB [H]

Identifier: 170756827

GI number: 170756827

Start: 1402525

End: 1403319

Strand: Direct

Name: yulB [H]

Synonym: CLD_3297

Alternate gene names: 170756827

Gene position: 1402525-1403319 (Clockwise)

Preceding gene: 170754402

Following gene: 170755614

Centisome position: 35.43

GC content: 28.3

Gene sequence:

>795_bases
ATGAAACTTAAACCTGAAATTAGAAGAGAAAATATATTAGCAGAAATAGAAAAAAATAAAACTGTGGATATAATGGAATT
AAGTGAAAAATTACAGGTATCAGAAATGACTATAAGAAGAGACTTAAAAAGATTAGAAAGCAGTGAAAAATTACTTAGAA
CCTATGGAGGAGCTACTCGTATATCTGAAGGAGAATGTAAAAAGGTTATAGATGATCCCTTAAAGGGTAGAGTATTAAAA
AATAAAGATGAAAAGGCTATTATAGGTAAATATGCAGGGGAATTAGTAGAAAATGATGATGTTATTATGATAGATGCTAG
TACTACAGCCTTAGCAATATGTAAATATATAAGAGATAAAAAGGTAACAGTAGTTACAAATTCTATAAGTGTAGTAACAT
CCTTAGCTTCTTTTGATAATATAACGGTGGTAGTAGCCTGTGGAATATTACGACATAGTTCTTTATCTTTAGTAGGCTCC
TATGTAGAAGAATCTTTTAAAAAATTTAATATAAAAAAATCTTTTATATCAGCCAAGGCCTTGTCCTTTGAAGCAGGACT
TACAGATATAAATGCTTTTGAAGTAGAAACAAAAAAGGCTGCTATGTCTGTAAGTAAAGAGGTTATAGTTCTTTTGGATC
ACTCTAAACTTAATAATATATCCCTTTTAAAGGTTTGTGAAACAAAAGAAATAAGTAAAATAATAATAGACGGACTTAAG
GAGTTTACAGTGGAAGAAGAAGAATTATTAAATAAATTTAAATCTAATGGTATAGAAGTAATAATAGCTAAATGA

Upstream 100 bases:

>100_bases
TTTGTAAAAAGTGGTGTCATGTACAAGTTATACTATAACTTAATGGTATTTTGTTTTATAATTAATTATAAAATAAAAAT
ATTAGGAATAGGTGGGAAAT

Downstream 100 bases:

>100_bases
TGTAGATATATTTTTTAGCATTTATGTTTGAAAAAGATATATGTATTTTATCTAAAGATAAAGATAAGATGGGAACACAT
ATTAAGATATATATGCCTAT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKLKPEIRRENILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATRISEGECKKVIDDPLKGRVLK
NKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDKKVTVVTNSISVVTSLASFDNITVVVACGILRHSSLSLVGS
YVEESFKKFNIKKSFISAKALSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
EFTVEEEELLNKFKSNGIEVIIAK

Sequences:

>Translated_264_residues
MKLKPEIRRENILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATRISEGECKKVIDDPLKGRVLK
NKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDKKVTVVTNSISVVTSLASFDNITVVVACGILRHSSLSLVGS
YVEESFKKFNIKKSFISAKALSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
EFTVEEEELLNKFKSNGIEVIIAK
>Mature_264_residues
MKLKPEIRRENILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATRISEGECKKVIDDPLKGRVLK
NKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDKKVTVVTNSISVVTSLASFDNITVVVACGILRHSSLSLVGS
YVEESFKKFNIKKSFISAKALSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
EFTVEEEELLNKFKSNGIEVIIAK

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=238, Percent_Identity=31.9327731092437, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1789519, Length=257, Percent_Identity=28.7937743190661, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788069, Length=223, Percent_Identity=31.390134529148, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI226510968, Length=240, Percent_Identity=31.6666666666667, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790753, Length=263, Percent_Identity=24.7148288973384, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1789829, Length=243, Percent_Identity=24.2798353909465, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789170, Length=234, Percent_Identity=27.7777777777778, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082344, Length=258, Percent_Identity=21.3178294573643, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787540, Length=232, Percent_Identity=24.5689655172414, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790635, Length=258, Percent_Identity=24.8062015503876, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787063, Length=242, Percent_Identity=26.0330578512397, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29447; Mature: 29447

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKPEIRRENILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATR
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ISEGECKKVIDDPLKGRVLKNKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDK
CCCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCC
KVTVVTNSISVVTSLASFDNITVVVACGILRHSSLSLVGSYVEESFKKFNIKKSFISAKA
EEEEEECHHHHHHHHHCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
LSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
HEEECCCCCCCEEEEHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHH
EFTVEEEELLNKFKSNGIEVIIAK
HHCCCHHHHHHHHHCCCEEEEEEC
>Mature Secondary Structure
MKLKPEIRRENILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATR
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ISEGECKKVIDDPLKGRVLKNKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDK
CCCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCC
KVTVVTNSISVVTSLASFDNITVVVACGILRHSSLSLVGSYVEESFKKFNIKKSFISAKA
EEEEEECHHHHHHHHHCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
LSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
HEEECCCCCCCEEEEHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHH
EFTVEEEELLNKFKSNGIEVIIAK
HHCCCHHHHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]