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The map label for this gene is yocH [H]

Identifier: 170756793

GI number: 170756793

Start: 2992602

End: 2993627

Strand: Reverse

Name: yocH [H]

Synonym: CLD_1765

Alternate gene names: 170756793

Gene position: 2993627-2992602 (Counterclockwise)

Preceding gene: 170755249

Following gene: 170757482

Centisome position: 75.63

GC content: 31.58

Gene sequence:

>1026_bases
TTGAATAAAAAAGTTTTATCTTTTATTATAATGCTAAATTTAATTTTAAGTATAGGCAGCAATGTTTTGGCTGCACCATC
TATTAAGGAATCCGATGACTTAAAAGAAACCAGGGAGCAGAAAAAACAAATACAACAAAGAGTTGAAAAAATGGACAGCG
AAATTGATAGTGTAATAAATGAAATTGATAAAAATAAGCAACTTATGAATAAGGTTAATGAAGATGTTAAAGATACAGAG
AATAAATTAAACCAGGTAAAAAATAATGTAAAAGAAAAAGAAGAGTTGTTTGGTAAAAGAGTAAGAGCTATGTATATAAG
TGGTGGAGATAGCTATCTAGATATACTTTTAGGCTCAGAAAATTTAAGTGATTTTATGTCAAGGGTAGATACAGTTTCAA
AAATAATGAAATTTGATGTAAATGTTGTTACTAAGTTAAAGGAAGAAAAAGAAGCTATATCAAAACAAAAAGAGAACTTA
GATCAGGAAAAGAATAAATTATCGGCTTTAAAGAAAAATAATGAAGTTGCTTTATTAAGATTGAATAAGAATGTAGAAGA
AGAAAAGAGGGTTCTTAGTAAAGTAAATGAAAAAGAAAATGAATTAGTAGCTAATGAAGCTGCAAAGGCTGAAGAGGCTA
GAAAAGCTGAAGAGAGTAGTAAAAAAGCTAAAGAGCTAGCATCCAGTGATAGTAATAGTTCAAAGGGGCAAACTTTATCC
CGTGGCGAATCAAATTCTACGTCCTATTCCAAAGTAATGGTAATGGAAGCCACTGCTTATGCAGGGGATGGAATAACTGC
TTCAGGGAACGGAACAAATAGAAATCCCAATGGATATAGTACTATAGCTGTAGACCCTAGAGTAATACCTTTGGGATCTA
GGGTTTATGTAGAAGGTTATGGATATGCTATTGCACATGATACTGGTGGTGCTATTAAAGGCAATAGAATAGATTTGTTT
ATGAACTCAGAGGCTGAGTGTAATAGTTGGGGAATAAGAAGTGTAAAAGTTTATATACTAGGATAG

Upstream 100 bases:

>100_bases
CTTACTTCCGTATTATAAAATAGGAAGTATTAGAATTGTAAAGCATAGAATAAATATAGTAGATTTTATATTTATAGATA
ATTTATAGGAGAGTGATAAA

Downstream 100 bases:

>100_bases
TAATATATTTTTATTTTAGAGGCAAATAAAAATTATTTTATTTGTAGTAATAAATAGTAGTAATTAATTTATATAGAATA
ATATTATTTAAAAGTTGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MNKKVLSFIIMLNLILSIGSNVLAAPSIKESDDLKETREQKKQIQQRVEKMDSEIDSVINEIDKNKQLMNKVNEDVKDTE
NKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSENLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAISKQKENL
DQEKNKLSALKKNNEVALLRLNKNVEEEKRVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGYGYAIAHDTGGAIKGNRIDLF
MNSEAECNSWGIRSVKVYILG

Sequences:

>Translated_341_residues
MNKKVLSFIIMLNLILSIGSNVLAAPSIKESDDLKETREQKKQIQQRVEKMDSEIDSVINEIDKNKQLMNKVNEDVKDTE
NKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSENLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAISKQKENL
DQEKNKLSALKKNNEVALLRLNKNVEEEKRVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGYGYAIAHDTGGAIKGNRIDLF
MNSEAECNSWGIRSVKVYILG
>Mature_341_residues
MNKKVLSFIIMLNLILSIGSNVLAAPSIKESDDLKETREQKKQIQQRVEKMDSEIDSVINEIDKNKQLMNKVNEDVKDTE
NKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSENLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAISKQKENL
DQEKNKLSALKKNNEVALLRLNKNVEEEKRVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGYGYAIAHDTGGAIKGNRIDLF
MNSEAECNSWGIRSVKVYILG

Specific function: Unknown

COG id: COG3883

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 37901; Mature: 37901

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKVLSFIIMLNLILSIGSNVLAAPSIKESDDLKETREQKKQIQQRVEKMDSEIDSVIN
CCHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIDKNKQLMNKVNEDVKDTENKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCC
NLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAISKQKENLDQEKNKLSALKKNNEVALLR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LNKNVEEEKRVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
ECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGY
CCCCCCCCHHEEEEEEEEEECCCCEEECCCCCCCCCCCCEEEEECCEEEECCCEEEEEEC
GYAIAHDTGGAIKGNRIDLFMNSEAECNSWGIRSVKVYILG
CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MNKKVLSFIIMLNLILSIGSNVLAAPSIKESDDLKETREQKKQIQQRVEKMDSEIDSVIN
CCHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIDKNKQLMNKVNEDVKDTENKLNQVKNNVKEKEELFGKRVRAMYISGGDSYLDILLGSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCC
NLSDFMSRVDTVSKIMKFDVNVVTKLKEEKEAISKQKENLDQEKNKLSALKKNNEVALLR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LNKNVEEEKRVLSKVNEKENELVANEAAKAEEARKAEESSKKAKELASSDSNSSKGQTLS
ECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RGESNSTSYSKVMVMEATAYAGDGITASGNGTNRNPNGYSTIAVDPRVIPLGSRVYVEGY
CCCCCCCCHHEEEEEEEEEECCCCEEECCCCCCCCCCCCEEEEECCEEEECCCEEEEEEC
GYAIAHDTGGAIKGNRIDLFMNSEAECNSWGIRSVKVYILG
CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]