| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756716
Identifier: 170756716
GI number: 170756716
Start: 2970892
End: 2971968
Strand: Reverse
Name: 170756716
Synonym: CLD_1785
Alternate gene names: NA
Gene position: 2971968-2970892 (Counterclockwise)
Preceding gene: 170755897
Following gene: 170756572
Centisome position: 75.08
GC content: 25.26
Gene sequence:
>1077_bases ATGAAAAGCTTGTTTAAAGATCCTTTGTTTTATAAAGACTGGAAGAATAGTAAATGGATTTGTTTACTTATGACTTTAAT TTTATTTTGGGATAAGCCTAGTAGAGCTTCAAGTGAGTTAAATATCCAAAAATATCAAATGGTTATGGATAAAAGTTTTG TATTTGATAAAATGTGGTTTAATCAATTTTTATTAGGATGGAGTAGCGTTAAAACTACGCTTGTGCTAGGAGTAATAGTA TTGCTTTGTATATTATTATTTAAAGGGGAAAAACAGGATTCTACCTGTGATTTGTTACATTCTATGCCTTTTACAAGAAA GGATATTATGGTATCTAAAATTAAAGTAGGAATTTTAACTATAGTTATACCATTTTTAATTAATTTTATAATACTAACAT TTTTTTATTTTAACAATAAATCCCATATAGGAAGTTCCTATGTAGATATACCTAAGTTTTATTTTATAAATTTATTATTT TCTTTATTCCTTTTTATGTTTTTAGTTTTTATGCAAAGTATAGTGGGACAATATTTTGCAGCAGCTGTAATTGCACCAAT AACTTTATTTGTACCAAATATGTTTGCATCTTATATAGTTGATTTAATAAGATTAAGTAAAGGGTTGAGGGATGATAGTG CTAGATTAATGTCATTAGATCAATTTGTTAGAAATTCAAATATATATGATATAGTTAATACTCATGCAATAGATAGAATG CAAAAAGGGCCAGATGGAGAACAAATGAGAAATATTGATAGATTTATATATGAAAATTTTGATATTAAAATAATGATACT TATAATTTTAATAGTAGTGTTTGCTATTTTATCAGTAATTATATATAACAGGATTAAATTAGAGAGAATAAATAAATTAA TAATATTTAAACCTGTTGAAACAGTATTTAAATTAGGTGTAGGTATATGTGTAGGAATGATTTTTTCACAAATGTTTGGA TATCCAAAGGGACCGGAACCAGTTGCCAATATGCCACTAATATATATAACCTTATTAATAGGTACAGTTATAGGATATTT TATAGCAAAACTAGTTGTGAAATTTTGTAGCAGATAA
Upstream 100 bases:
>100_bases TTGCAAGAGAAATTGTTAGAGGCTGGGGCAGAGTTTGTAGAAGAAATAGATTTAAGTTTAGAAGATATGTTCATATACTC CATGGAAGGAGGAAAAAAGA
Downstream 100 bases:
>100_bases GATTTTATCCGATGACTATCCGCTCTAATACTCCCATCTTCTTCAAAGTGGGAGTAAAGAGCGGCTACATCTCTGGATAA CGATTTCTAAGCTTTAGAGG
Product: ABC transporter, permease protein
Products: NA
Alternate protein names: Membrane Spanning Protein
Number of amino acids: Translated: 358; Mature: 358
Protein sequence:
>358_residues MKSLFKDPLFYKDWKNSKWICLLMTLILFWDKPSRASSELNIQKYQMVMDKSFVFDKMWFNQFLLGWSSVKTTLVLGVIV LLCILLFKGEKQDSTCDLLHSMPFTRKDIMVSKIKVGILTIVIPFLINFIILTFFYFNNKSHIGSSYVDIPKFYFINLLF SLFLFMFLVFMQSIVGQYFAAAVIAPITLFVPNMFASYIVDLIRLSKGLRDDSARLMSLDQFVRNSNIYDIVNTHAIDRM QKGPDGEQMRNIDRFIYENFDIKIMILIILIVVFAILSVIIYNRIKLERINKLIIFKPVETVFKLGVGICVGMIFSQMFG YPKGPEPVANMPLIYITLLIGTVIGYFIAKLVVKFCSR
Sequences:
>Translated_358_residues MKSLFKDPLFYKDWKNSKWICLLMTLILFWDKPSRASSELNIQKYQMVMDKSFVFDKMWFNQFLLGWSSVKTTLVLGVIV LLCILLFKGEKQDSTCDLLHSMPFTRKDIMVSKIKVGILTIVIPFLINFIILTFFYFNNKSHIGSSYVDIPKFYFINLLF SLFLFMFLVFMQSIVGQYFAAAVIAPITLFVPNMFASYIVDLIRLSKGLRDDSARLMSLDQFVRNSNIYDIVNTHAIDRM QKGPDGEQMRNIDRFIYENFDIKIMILIILIVVFAILSVIIYNRIKLERINKLIIFKPVETVFKLGVGICVGMIFSQMFG YPKGPEPVANMPLIYITLLIGTVIGYFIAKLVVKFCSR >Mature_358_residues MKSLFKDPLFYKDWKNSKWICLLMTLILFWDKPSRASSELNIQKYQMVMDKSFVFDKMWFNQFLLGWSSVKTTLVLGVIV LLCILLFKGEKQDSTCDLLHSMPFTRKDIMVSKIKVGILTIVIPFLINFIILTFFYFNNKSHIGSSYVDIPKFYFINLLF SLFLFMFLVFMQSIVGQYFAAAVIAPITLFVPNMFASYIVDLIRLSKGLRDDSARLMSLDQFVRNSNIYDIVNTHAIDRM QKGPDGEQMRNIDRFIYENFDIKIMILIILIVVFAILSVIIYNRIKLERINKLIIFKPVETVFKLGVGICVGMIFSQMFG YPKGPEPVANMPLIYITLLIGTVIGYFIAKLVVKFCSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41531; Mature: 41531
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLFKDPLFYKDWKNSKWICLLMTLILFWDKPSRASSELNIQKYQMVMDKSFVFDKMWF CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH NQFLLGWSSVKTTLVLGVIVLLCILLFKGEKQDSTCDLLHSMPFTRKDIMVSKIKVGILT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH IVIPFLINFIILTFFYFNNKSHIGSSYVDIPKFYFINLLFSLFLFMFLVFMQSIVGQYFA HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAVIAPITLFVPNMFASYIVDLIRLSKGLRDDSARLMSLDQFVRNSNIYDIVNTHAIDRM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH QKGPDGEQMRNIDRFIYENFDIKIMILIILIVVFAILSVIIYNRIKLERINKLIIFKPVE HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCHH TVFKLGVGICVGMIFSQMFGYPKGPEPVANMPLIYITLLIGTVIGYFIAKLVVKFCSR HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKSLFKDPLFYKDWKNSKWICLLMTLILFWDKPSRASSELNIQKYQMVMDKSFVFDKMWF CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH NQFLLGWSSVKTTLVLGVIVLLCILLFKGEKQDSTCDLLHSMPFTRKDIMVSKIKVGILT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH IVIPFLINFIILTFFYFNNKSHIGSSYVDIPKFYFINLLFSLFLFMFLVFMQSIVGQYFA HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAVIAPITLFVPNMFASYIVDLIRLSKGLRDDSARLMSLDQFVRNSNIYDIVNTHAIDRM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH QKGPDGEQMRNIDRFIYENFDIKIMILIILIVVFAILSVIIYNRIKLERINKLIIFKPVE HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCHH TVFKLGVGICVGMIFSQMFGYPKGPEPVANMPLIYITLLIGTVIGYFIAKLVVKFCSR HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA