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The map label for this gene is rimM

Identifier: 170756645

GI number: 170756645

Start: 2567304

End: 2567798

Strand: Reverse

Name: rimM

Synonym: CLD_2194

Alternate gene names: 170756645

Gene position: 2567798-2567304 (Counterclockwise)

Preceding gene: 170756458

Following gene: 170757200

Centisome position: 64.87

GC content: 28.69

Gene sequence:

>495_bases
ATGAAAGAGTTTCTAGCGGTAGGAGAAATAATAAATACTCATGGTATAAAGGGAGAGGTAAAAGTATATCCTTTAACTGA
TGATATGAAAAGATTTAAAAAATTAAAAGAAGTATTTATAGATGGAGAGGGAAGAAAAATATTATCCTGTAAGCTTCAAC
CTAATAATGTAGTTTTAAAAATAGAAGGCATAGATTCTATAGAAGAGGCTAATAAGTATAGAAAAAAGCTTCTAGAAATT
AAAAGAGAAAATTCTGTAAAGCTTCCAAAAGGAAGTTATTTTATAGCAGATTTAATAGAATGTAGAGTTATAGATGAAAA
TGGAAGAGAAATAGGACAAATATCTGATGTAATAAAGACTGGCAGTAATGATGTATATGAGGTAAAAGGAAAGAGCGAGG
TATTAGTACCAGCCATAAAAGATATAGTTACAAATATAGATATAGAAAACAAAACTGTAACTATAAAACCTTTGGAGATA
TGGCAATGCGAATAG

Upstream 100 bases:

>100_bases
CACCTAACTCTTTTTTATATATAATATATTTTTATGCTGCTGAATTTATAAAAGAAAAATGGGAATAATTATAATATAAT
GGTTAGAGGAGAGAAGATAT

Downstream 100 bases:

>100_bases
ATGTGCTAACATTATTTCCACAAATGTTTTCTATATTTAATCACAGCATAATAGGAAGAGCTATAGAAAAGGAAATTTTA
AAAATAAACACTGTAAATAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEGRKILSCKLQPNNVVLKIEGIDSIEEANKYRKKLLEI
KRENSVKLPKGSYFIADLIECRVIDENGREIGQISDVIKTGSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEI
WQCE

Sequences:

>Translated_164_residues
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEGRKILSCKLQPNNVVLKIEGIDSIEEANKYRKKLLEI
KRENSVKLPKGSYFIADLIECRVIDENGREIGQISDVIKTGSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEI
WQCE
>Mature_164_residues
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEGRKILSCKLQPNNVVLKIEGIDSIEEANKYRKKLLEI
KRENSVKLPKGSYFIADLIECRVIDENGREIGQISDVIKTGSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEI
WQCE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=163, Percent_Identity=24.5398773006135, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18633; Mature: 18633

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEGRKILSCKLQPNNVVLK
CCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEE
IEGIDSIEEANKYRKKLLEIKRENSVKLPKGSYFIADLIECRVIDENGREIGQISDVIKT
EECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEEEEECCCCCHHHHHHHHHHC
GSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEIWQCE
CCCCEEEECCCCEEEHHHHHHHHHCCCCCCCEEEEEEEEEEECC
>Mature Secondary Structure
MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEGRKILSCKLQPNNVVLK
CCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEE
IEGIDSIEEANKYRKKLLEIKRENSVKLPKGSYFIADLIECRVIDENGREIGQISDVIKT
EECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEEEEECCCCCHHHHHHHHHHC
GSNDVYEVKGKSEVLVPAIKDIVTNIDIENKTVTIKPLEIWQCE
CCCCEEEECCCCEEEHHHHHHHHHCCCCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA