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The map label for this gene is yobV [H]

Identifier: 170756608

GI number: 170756608

Start: 3500575

End: 3501531

Strand: Reverse

Name: yobV [H]

Synonym: CLD_1309

Alternate gene names: 170756608

Gene position: 3501531-3500575 (Counterclockwise)

Preceding gene: 170757739

Following gene: 170755056

Centisome position: 88.46

GC content: 22.15

Gene sequence:

>957_bases
ATGTCAAAGATTTCTCATATATTGCAATTATTAATTATACTTCAGTATAAAGAGTTTGTAACGGCTGGGGAACTTTCAGA
TTTTTTAATGGTAGATAAAAAAACAATATATAGATATATAAATAGTTTAAATTTAGCTAATATACCTATTCACGCTAAAA
AAGGAAGATATGGAGGATTTTATATAGACAAAAATTTTTACATGAAAAGTCCTGAATTAAATGAAAATGAAATAAAAGCG
TTGTTGATGGCAGGAGAAATTTTAACAGAAGAAAATGGATTTGTCTATGAAAAAGAATATAAAACAGCTTTAGGAAAAAT
AAAAAATAATTTAAGTAGTAAAGATATAGAGTTAGATAATATATATAACTTTAATGATTTTAGGATAGATAGTCTAGGAA
ATAATAAAATTTCACAGGATAGAATATGCAAAATATGTAATTCTATAATGAACAATAAATCTATAAATATAAGTTATTTT
AGCATAAATAGGAACGAAATTACTTTTAGAAAGATAGATCCCTATGATATTATGTTTAAATATGGGAAATGGTATATTGT
AGGATATTGTCATTTCAATAAATACATAGAAATATTTGATATAAACAGAATTAAAGATATAAAAGATACAAGAGATACTT
TTATTATTTCTAAAAATTTTTCAATAAATAGTTTTTTAGAAAAGTATAAAAGTATATTTACACACAATAAGGTAAAGGTT
CAACTGAAGTTTAATAAAAATATAGCAGATTTTATAAAAGAGAATAAATGGTATGTAAATGAAGAAATAGATGAACTTGA
AAATGGTGAAGTTTTATTTAAAGTATATGTAGAAAATTTACAAGAAATAAAGAGATGGATTTTAGGTTTCGGAAAAGATG
TACAGGTTTTAGAACCTAAAGAATTGAAATTACAGCTGATAGATGAAATATATGAGTTAAATAATATATATAATTAA

Upstream 100 bases:

>100_bases
ATATTTATTATATATAATTAATTTAAAGATATTATTTGGTAAAACTAAAAAATATTATAAACATAACGATATAACTAAAG
AATAGAAAAGAGGTGATAAT

Downstream 100 bases:

>100_bases
TAAAGTTTAAATAAACTTGAATAATTTTATTTAAATTGGCAATTATATAAATGTAGTTAGGCGAGATAATCTCCCTAATG
CATCAAACATATAAATTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSKISHILQLLIILQYKEFVTAGELSDFLMVDKKTIYRYINSLNLANIPIHAKKGRYGGFYIDKNFYMKSPELNENEIKA
LLMAGEILTEENGFVYEKEYKTALGKIKNNLSSKDIELDNIYNFNDFRIDSLGNNKISQDRICKICNSIMNNKSINISYF
SINRNEITFRKIDPYDIMFKYGKWYIVGYCHFNKYIEIFDINRIKDIKDTRDTFIISKNFSINSFLEKYKSIFTHNKVKV
QLKFNKNIADFIKENKWYVNEEIDELENGEVLFKVYVENLQEIKRWILGFGKDVQVLEPKELKLQLIDEIYELNNIYN

Sequences:

>Translated_318_residues
MSKISHILQLLIILQYKEFVTAGELSDFLMVDKKTIYRYINSLNLANIPIHAKKGRYGGFYIDKNFYMKSPELNENEIKA
LLMAGEILTEENGFVYEKEYKTALGKIKNNLSSKDIELDNIYNFNDFRIDSLGNNKISQDRICKICNSIMNNKSINISYF
SINRNEITFRKIDPYDIMFKYGKWYIVGYCHFNKYIEIFDINRIKDIKDTRDTFIISKNFSINSFLEKYKSIFTHNKVKV
QLKFNKNIADFIKENKWYVNEEIDELENGEVLFKVYVENLQEIKRWILGFGKDVQVLEPKELKLQLIDEIYELNNIYN
>Mature_317_residues
SKISHILQLLIILQYKEFVTAGELSDFLMVDKKTIYRYINSLNLANIPIHAKKGRYGGFYIDKNFYMKSPELNENEIKAL
LMAGEILTEENGFVYEKEYKTALGKIKNNLSSKDIELDNIYNFNDFRIDSLGNNKISQDRICKICNSIMNNKSINISYFS
INRNEITFRKIDPYDIMFKYGKWYIVGYCHFNKYIEIFDINRIKDIKDTRDTFIISKNFSINSFLEKYKSIFTHNKVKVQ
LKFNKNIADFIKENKWYVNEEIDELENGEVLFKVYVENLQEIKRWILGFGKDVQVLEPKELKLQLIDEIYELNNIYN

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 37810; Mature: 37679

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKISHILQLLIILQYKEFVTAGELSDFLMVDKKTIYRYINSLNLANIPIHAKKGRYGGF
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCE
YIDKNFYMKSPELNENEIKALLMAGEILTEENGFVYEKEYKTALGKIKNNLSSKDIELDN
EEECCEEECCCCCCHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHCCCCCCEEECC
IYNFNDFRIDSLGNNKISQDRICKICNSIMNNKSINISYFSINRNEITFRKIDPYDIMFK
EECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCCEEEEE
YGKWYIVGYCHFNKYIEIFDINRIKDIKDTRDTFIISKNFSINSFLEKYKSIFTHNKVKV
CCCEEEEEEEEECCEEEEEECCCHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
QLKFNKNIADFIKENKWYVNEEIDELENGEVLFKVYVENLQEIKRWILGFGKDVQVLEPK
EEEECCCHHHHHHCCCEEECCCHHCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEECCH
ELKLQLIDEIYELNNIYN
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKISHILQLLIILQYKEFVTAGELSDFLMVDKKTIYRYINSLNLANIPIHAKKGRYGGF
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCE
YIDKNFYMKSPELNENEIKALLMAGEILTEENGFVYEKEYKTALGKIKNNLSSKDIELDN
EEECCEEECCCCCCHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHCCCCCCEEECC
IYNFNDFRIDSLGNNKISQDRICKICNSIMNNKSINISYFSINRNEITFRKIDPYDIMFK
EECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCCEEEEE
YGKWYIVGYCHFNKYIEIFDINRIKDIKDTRDTFIISKNFSINSFLEKYKSIFTHNKVKV
CCCEEEEEEEEECCEEEEEECCCHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
QLKFNKNIADFIKENKWYVNEEIDELENGEVLFKVYVENLQEIKRWILGFGKDVQVLEPK
EEEECCCHHHHHHCCCEEECCCHHCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEECCH
ELKLQLIDEIYELNNIYN
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]