| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is 170756574
Identifier: 170756574
GI number: 170756574
Start: 1974099
End: 1975286
Strand: Reverse
Name: 170756574
Synonym: CLD_2790
Alternate gene names: NA
Gene position: 1975286-1974099 (Counterclockwise)
Preceding gene: 170757661
Following gene: 170756016
Centisome position: 49.9
GC content: 29.97
Gene sequence:
>1188_bases ATGGCATCAAGTTTAGCTATTATTATTCTATTGGGATTAATCGCAAATAAGCTCTTTGAAAAATTAAAACTGCCAGGTCT TTTAGGAATGTTAATATTAGGTATTTTAATAGGACCTCATGGCTTAAACTGGTTAAGCAAAGATATTTTAAATGCTTCAG CGGATCTTAGAAAAATTGCTTTAATTGTAATTTTATTAAGGGCAGGATTAGGTCTTAATAAAGAAGAATTAAAATTGGTT GGTAAAACAGCTCTAAAATTAAGCTGTATACCTGGAATTATAGAAGGATTATTCATAGCAATAGCCTCCGTAAAACTTTT AGGTTTTTCTTTTGTACAAGGAGGCTTATTAGGATTTATTATTGCTGCAGTTTCACCAGCAGTAGTTGTACCTCAAATGT TAAACTTAATAGACAAAGGCCTTGGGAAAGCTAAGGGTATACCAACTCTTATACTAGCCGGTGCTTCTATAGATGATGTT TTTGCAATAACAATATTTAGCACATTTTTAGGATTATATGCGGGGAAGAATATAAATATAGCTATACAGATATTAAAAAT ACCTGTTTCTATAATATTAGGTACATTAATTGGTGTATTATCAGCAATCATTATTATAAAGATATTTAAAAAGTATCCTA TAGATAACACTAAAAAGATATTAATTATACTTAGTATATCTATTATACTTACTTTAATAGAAGCTTTACTAAAAGGTAAA TTAGAAATAGCTAGCTTATTGGGTGTTATGGCTTTAGGATTTGTAATATCTGATAAAATTCCTAGTATAGGAGATAAGGT ATCTAAAGGATTAAATGAAATATGGGTTTTTGCTCAAATACTCTTATTTGTCCTCGTAGGAGCTGAAGTAAATATGGTAA TAGCTTTTAAATCAGGATTTTTAGGTATAATCATTATTGCTTTAGGTCTTATAGGAAGAAGTATAGGAGTATTAATTTCT CTGAAAGGTTCAAATTTAAATAAAGAAGAAAAACTCTTTTGTATTATAGCCTATATTCCTAAAGCTACAGTTCAAGCAGC TATGGGCGCAGTACCATTAGCCAATGGTGTAGAGGCAGGAGATATTATTTTAGCAATAGCAGTTTTGTCAATTTTAACTA CAGCTCCATTGGGAGCTATAGCAATAAATTTATCTGGTCCAAAATTATTAGAATCAAACCTCTCTTAG
Upstream 100 bases:
>100_bases GGAGTTCGCCATAATTGCGTAATGCTAATGACTCCTACAAATAATATAATTATTTGTAGGATTTTTTGCGTTTTGAGTAA AATTTAAAGGAGGAAATTTT
Downstream 100 bases:
>100_bases ACTAGATCAAATTTTTTATAAAATATATTTCTTTTGCTATAAAAAATTTTGAAAAATACAAGAAAATCATTAAGTTGTAT AAAAATAGATTTAATTTTAA
Product: monovalent cation:proton antiporter-2 (CPA2) family protein
Products: NA
Alternate protein names: Na(+)/H(+) Antiporter; Transporter CPA2 Family; Na+/H+ Antiporter; Sodium/Proton Antiporter CPA1 Family; Na+/H+-Exchanging Protein; Sodium/Hydrogen Antiporter; Sodium/Hydrogen Exchanger Family Protein; Na+/H+-Exchanging ProteinNa+/H+ Antiporter; Monovalent CationProton Antiporter-2 Family Protein; Transporter Monovalent CationProton Antiporter-2 Family; Sodium/Hydrogen Exchanger/Universal Stress Family Protein
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MASSLAIIILLGLIANKLFEKLKLPGLLGMLILGILIGPHGLNWLSKDILNASADLRKIALIVILLRAGLGLNKEELKLV GKTALKLSCIPGIIEGLFIAIASVKLLGFSFVQGGLLGFIIAAVSPAVVVPQMLNLIDKGLGKAKGIPTLILAGASIDDV FAITIFSTFLGLYAGKNINIAIQILKIPVSIILGTLIGVLSAIIIIKIFKKYPIDNTKKILIILSISIILTLIEALLKGK LEIASLLGVMALGFVISDKIPSIGDKVSKGLNEIWVFAQILLFVLVGAEVNMVIAFKSGFLGIIIIALGLIGRSIGVLIS LKGSNLNKEEKLFCIIAYIPKATVQAAMGAVPLANGVEAGDIILAIAVLSILTTAPLGAIAINLSGPKLLESNLS
Sequences:
>Translated_395_residues MASSLAIIILLGLIANKLFEKLKLPGLLGMLILGILIGPHGLNWLSKDILNASADLRKIALIVILLRAGLGLNKEELKLV GKTALKLSCIPGIIEGLFIAIASVKLLGFSFVQGGLLGFIIAAVSPAVVVPQMLNLIDKGLGKAKGIPTLILAGASIDDV FAITIFSTFLGLYAGKNINIAIQILKIPVSIILGTLIGVLSAIIIIKIFKKYPIDNTKKILIILSISIILTLIEALLKGK LEIASLLGVMALGFVISDKIPSIGDKVSKGLNEIWVFAQILLFVLVGAEVNMVIAFKSGFLGIIIIALGLIGRSIGVLIS LKGSNLNKEEKLFCIIAYIPKATVQAAMGAVPLANGVEAGDIILAIAVLSILTTAPLGAIAINLSGPKLLESNLS >Mature_394_residues ASSLAIIILLGLIANKLFEKLKLPGLLGMLILGILIGPHGLNWLSKDILNASADLRKIALIVILLRAGLGLNKEELKLVG KTALKLSCIPGIIEGLFIAIASVKLLGFSFVQGGLLGFIIAAVSPAVVVPQMLNLIDKGLGKAKGIPTLILAGASIDDVF AITIFSTFLGLYAGKNINIAIQILKIPVSIILGTLIGVLSAIIIIKIFKKYPIDNTKKILIILSISIILTLIEALLKGKL EIASLLGVMALGFVISDKIPSIGDKVSKGLNEIWVFAQILLFVLVGAEVNMVIAFKSGFLGIIIIALGLIGRSIGVLISL KGSNLNKEEKLFCIIAYIPKATVQAAMGAVPLANGVEAGDIILAIAVLSILTTAPLGAIAINLSGPKLLESNLS
Specific function: Unknown
COG id: COG0025
COG function: function code P; NhaP-type Na+/H+ and K+/H+ antiporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI47271479, Length=356, Percent_Identity=35.1123595505618, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI66793392, Length=358, Percent_Identity=33.5195530726257, Blast_Score=158, Evalue=8e-39, Organism=Homo sapiens, GI154937338, Length=301, Percent_Identity=33.8870431893688, Blast_Score=137, Evalue=2e-32, Organism=Caenorhabditis elegans, GI17567635, Length=405, Percent_Identity=29.3827160493827, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI32566724, Length=409, Percent_Identity=30.3178484107579, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI25152227, Length=420, Percent_Identity=26.4285714285714, Blast_Score=92, Evalue=7e-19, Organism=Drosophila melanogaster, GI45550940, Length=390, Percent_Identity=36.6666666666667, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI20129297, Length=390, Percent_Identity=36.6666666666667, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI24649169, Length=400, Percent_Identity=31.5, Blast_Score=113, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41298; Mature: 41167
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSLAIIILLGLIANKLFEKLKLPGLLGMLILGILIGPHGLNWLSKDILNASADLRKIA CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHH LIVILLRAGLGLNKEELKLVGKTALKLSCIPGIIEGLFIAIASVKLLGFSFVQGGLLGFI HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAAVSPAVVVPQMLNLIDKGLGKAKGIPTLILAGASIDDVFAITIFSTFLGLYAGKNINI HHHHCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEE AIQILKIPVSIILGTLIGVLSAIIIIKIFKKYPIDNTKKILIILSISIILTLIEALLKGK EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCC LEIASLLGVMALGFVISDKIPSIGDKVSKGLNEIWVFAQILLFVLVGAEVNMVIAFKSGF HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCH LGIIIIALGLIGRSIGVLISLKGSNLNKEEKLFCIIAYIPKATVQAAMGAVPLANGVEAG HHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCCHH DIILAIAVLSILTTAPLGAIAINLSGPKLLESNLS HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCC >Mature Secondary Structure ASSLAIIILLGLIANKLFEKLKLPGLLGMLILGILIGPHGLNWLSKDILNASADLRKIA CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHH LIVILLRAGLGLNKEELKLVGKTALKLSCIPGIIEGLFIAIASVKLLGFSFVQGGLLGFI HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAAVSPAVVVPQMLNLIDKGLGKAKGIPTLILAGASIDDVFAITIFSTFLGLYAGKNINI HHHHCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEE AIQILKIPVSIILGTLIGVLSAIIIIKIFKKYPIDNTKKILIILSISIILTLIEALLKGK EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCC LEIASLLGVMALGFVISDKIPSIGDKVSKGLNEIWVFAQILLFVLVGAEVNMVIAFKSGF HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCH LGIIIIALGLIGRSIGVLISLKGSNLNKEEKLFCIIAYIPKATVQAAMGAVPLANGVEAG HHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCCHH DIILAIAVLSILTTAPLGAIAINLSGPKLLESNLS HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA