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The map label for this gene is rnfC [H]

Identifier: 170756441

GI number: 170756441

Start: 2607315

End: 2608619

Strand: Reverse

Name: rnfC [H]

Synonym: CLD_2154

Alternate gene names: 170756441

Gene position: 2608619-2607315 (Counterclockwise)

Preceding gene: 170755824

Following gene: 170755172

Centisome position: 65.9

GC content: 33.41

Gene sequence:

>1305_bases
ATGGAAAAAATGTACAAGTTTCCTTTAAAGATGCATGTAGGAGCACCAGATGTGGCATGTGTTAAAGAAGGACAAGAAGT
TAAAAGAGGAGAATGTATAGCTGAGCCTAATGGATTGGGAGCTAAAATACATACGAGTGTATCTGGTATAGTTGAGAAAA
TTACAGATACAGAAATAATAATAAAAGCAGATGAAAATGGCTCAAAGGACTTTGTTAAAATCAAAGAATGTGACAATATT
CTAGAAACTATTGCTGAAGCAGGTATAGTTGGAGCTGGTGGAGCTGGATTCCCAACACATATAAAATTAAAAGCAGATAT
ACCAGATGGATACGTTATAGCAAACTGTGTAGAATGCGAACCAGCTTTGCATCATAATATAGCATTTATAGAAAAAGAGC
CTGATACAATAATTAAAGGTTTAAGATATGCTATGAAAGCAACTAATGCTCCAAAGGGATACATAGCAATAAAAGGTAAG
CACGAGAATGCTATAAAAATATTAAAAGATCATTTAAAAGGAGCTTCTGATATAGAAGTAAAAGAGCTTCAAGATATATA
TCCAATGGGAGAAGAAAGAGCTATAATTCATGCTATATTAGGGAAATGGTTAGAACCAACTCAGCTTCCATTAGAAGCAA
AATGTGTTGTAATTAATGGAGAAACTTTAGCTAATATAACAAGAGCAGTAGAAGATAGAAAGCCTGTTATAGACAAAGAT
ATAACAATAATAGGAAAATTAAAGACAGGTAATAAGCCTAATGTATTATTTGATGTACCAGTAGGCACACCAATACATGA
TTTAATAGAAGAGTGTGGTGGAATAGATGGAGAATTTGGAGAAGTAGTAATAGGGGGACCATATACAGGCAAGGCTGGAG
ATATAAAAGAGTCTGTAGTGACTAAAATGTCAGGTGGAGCAATAGTTACAATACAACTACCAGAATACAAAGGACCATTA
GGATTATTAGTATGTGCTTGTGGAGCAAATGAAGAAAGATTGAGAGATATAGCTTCTAAAATGAAAGCAGAAGTAGTAGG
AGTTACTAAATGTAAGAATGTAGAAGAAATAAGAGGAGCAAATAAATGTAAAACTCCAGGAGATTGTCCAGGGCAGGTTG
CAGGAATAATGAAATTAAAGAAAGATGGAGCAAAAAGAATACTAATATCAAATTGTAGCGATTGTTCAAATACAGTTATG
TGCTGCGCTCCAAATTTAGGAATCCCAGTATATCATCATACAGATCATGTATTTAGAACAATAGATCATACATTAACAAG
AAGACTTCCTATAGATAAAAAATAA

Upstream 100 bases:

>100_bases
CACCCTATAGAATAATTTTATATATGCAGTTTCTAGTAGTAAAACTGTCATTTTGTTTTTATAATGAATATTGTAAAGAA
AAAATACAGGGGGTAGTGAC

Downstream 100 bases:

>100_bases
GTATATCTTATTAAATATATTGTAAGGAGATGGGTTAACATGTCAATGTCAGCAGAACATGCAGAAGAGCTAAAAAATGA
ACCAGCAGTAGTTTGTTGTA

Product: putative electron transport protein

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDTEIIIKADENGSKDFVKIKECDNI
LETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGK
HENAIKILKDHLKGASDIEVKELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
ITIIGKLKTGNKPNVLFDVPVGTPIHDLIEECGGIDGEFGEVVIGGPYTGKAGDIKESVVTKMSGGAIVTIQLPEYKGPL
GLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGANKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVM
CCAPNLGIPVYHHTDHVFRTIDHTLTRRLPIDKK

Sequences:

>Translated_434_residues
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDTEIIIKADENGSKDFVKIKECDNI
LETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGK
HENAIKILKDHLKGASDIEVKELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
ITIIGKLKTGNKPNVLFDVPVGTPIHDLIEECGGIDGEFGEVVIGGPYTGKAGDIKESVVTKMSGGAIVTIQLPEYKGPL
GLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGANKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVM
CCAPNLGIPVYHHTDHVFRTIDHTLTRRLPIDKK
>Mature_434_residues
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDTEIIIKADENGSKDFVKIKECDNI
LETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGK
HENAIKILKDHLKGASDIEVKELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
ITIIGKLKTGNKPNVLFDVPVGTPIHDLIEECGGIDGEFGEVVIGGPYTGKAGDIKESVVTKMSGGAIVTIQLPEYKGPL
GLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGANKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVM
CCAPNLGIPVYHHTDHVFRTIDHTLTRRLPIDKK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=310, Percent_Identity=25.4838709677419, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538 [H]

Pfam domain/function: PF01512 Complex1_51K [H]

EC number: NA

Molecular weight: Translated: 46860; Mature: 46860

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDTEII
CCCCEECCEEEECCCCCHHHHHCCCHHHCCCEECCCCCCCEEEEHHHHHHHHHHCCCEEE
IKADENGSKDFVKIKECDNILETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECE
EEECCCCCCCEEEHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEECCCCCEEEEEEEECC
PALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGKHENAIKILKDHLKGASDIEV
CHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCH
KELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCC
ITIIGKLKTGNKPNVLFDVPVGTPIHDLIEECGGIDGEFGEVVIGGPYTGKAGDIKESVV
EEEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHH
TKMSGGAIVTIQLPEYKGPLGLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGA
HHCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHEEEHHHCCCHHHHCCC
NKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVMCCAPNLGIPVYHHTDHVFRT
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCEEEECCHHHHHH
IDHTLTRRLPIDKK
HHHHHHHCCCCCCC
>Mature Secondary Structure
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDTEII
CCCCEECCEEEECCCCCHHHHHCCCHHHCCCEECCCCCCCEEEEHHHHHHHHHHCCCEEE
IKADENGSKDFVKIKECDNILETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECE
EEECCCCCCCEEEHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEECCCCCEEEEEEEECC
PALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGKHENAIKILKDHLKGASDIEV
CHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCH
KELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCC
ITIIGKLKTGNKPNVLFDVPVGTPIHDLIEECGGIDGEFGEVVIGGPYTGKAGDIKESVV
EEEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHH
TKMSGGAIVTIQLPEYKGPLGLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGA
HHCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHEEEHHHCCCHHHHCCC
NKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVMCCAPNLGIPVYHHTDHVFRT
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCEEEECCHHHHHH
IDHTLTRRLPIDKK
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA