| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756356
Identifier: 170756356
GI number: 170756356
Start: 2218922
End: 2219371
Strand: Reverse
Name: 170756356
Synonym: CLD_2558
Alternate gene names: NA
Gene position: 2219371-2218922 (Counterclockwise)
Preceding gene: 170756891
Following gene: 170756826
Centisome position: 56.07
GC content: 19.33
Gene sequence:
>450_bases ATGGCTGTGGGAAAAGATAATTTAGGAGATTTTATTCAAAAAAACATTTTGTTTGATAATCTTATTAATATACATCAGTG TAATTGTAACTTCATCATCAAATCTATTAGAATAATATTTAAAAACTTTCCATATAAAATAGATCTAAAAGTAAACTTAA ATGATGTAATCAAAATTATTGATTATATTTTACATTTAGAAAAAAATTTATTATATTTGAATCTAGATGAAATATCTTAT AATTTAAATATTGATAAAAAGAAAATTGAAGCTATAGTGAAAATATTCTCTATTGATAAGGAAAAAGTAAATAAACATTA TTTACTACCAAATTCATTTAAAAACTATAATAATAATCCAATTATAAAAACTAAAAAAGGATATTTTTTATTGGATAGGA GAATAGTTGCATTAGGTTTTTTGATAAATTGTGTGATTTGGGTAGATTAA
Upstream 100 bases:
>100_bases ATGATGAAGAAACTAAAAAAATAAATTTATAAATATAATAAATTTATCAACAGAGTATATATTCACATTAAGGTTAGAGA GTAAAAATTATTTTAAAGTT
Downstream 100 bases:
>100_bases GAGAAAGTAAACAAGATGAATTTAATGATTTCTTAGGTAAAGAATTTGAAAGATTTGTGAAAAAGTTATTACAAGAAAAA GGAATAGATTTTTTATATGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MAVGKDNLGDFIQKNILFDNLINIHQCNCNFIIKSIRIIFKNFPYKIDLKVNLNDVIKIIDYILHLEKNLLYLNLDEISY NLNIDKKKIEAIVKIFSIDKEKVNKHYLLPNSFKNYNNNPIIKTKKGYFLLDRRIVALGFLINCVIWVD
Sequences:
>Translated_149_residues MAVGKDNLGDFIQKNILFDNLINIHQCNCNFIIKSIRIIFKNFPYKIDLKVNLNDVIKIIDYILHLEKNLLYLNLDEISY NLNIDKKKIEAIVKIFSIDKEKVNKHYLLPNSFKNYNNNPIIKTKKGYFLLDRRIVALGFLINCVIWVD >Mature_148_residues AVGKDNLGDFIQKNILFDNLINIHQCNCNFIIKSIRIIFKNFPYKIDLKVNLNDVIKIIDYILHLEKNLLYLNLDEISYN LNIDKKKIEAIVKIFSIDKEKVNKHYLLPNSFKNYNNNPIIKTKKGYFLLDRRIVALGFLINCVIWVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17589; Mature: 17458
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVGKDNLGDFIQKNILFDNLINIHQCNCNFIIKSIRIIFKNFPYKIDLKVNLNDVIKII CCCCCCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHH DYILHLEKNLLYLNLDEISYNLNIDKKKIEAIVKIFSIDKEKVNKHYLLPNSFKNYNNNP HHHHHHHCCEEEEEEHHEEEECCCCHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCCCCC IIKTKKGYFLLDRRIVALGFLINCVIWVD EEEECCCEEEEHHHHHHHHHHHHEEEECC >Mature Secondary Structure AVGKDNLGDFIQKNILFDNLINIHQCNCNFIIKSIRIIFKNFPYKIDLKVNLNDVIKII CCCCCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHH DYILHLEKNLLYLNLDEISYNLNIDKKKIEAIVKIFSIDKEKVNKHYLLPNSFKNYNNNP HHHHHHHCCEEEEEEHHEEEECCCCHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCCCCC IIKTKKGYFLLDRRIVALGFLINCVIWVD EEEECCCEEEEHHHHHHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA