Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 170756265

GI number: 170756265

Start: 961960

End: 962613

Strand: Direct

Name: yjcF [C]

Synonym: CLD_3720

Alternate gene names: 170756265

Gene position: 961960-962613 (Clockwise)

Preceding gene: 170757080

Following gene: 170756381

Centisome position: 24.3

GC content: 33.33

Gene sequence:

>654_bases
ATGAGTATTATTAATCCACGAATTCCAGCAGATCTGATAAGGATAGAGGATTTTTCATCATATGCACAGCGATATTTATA
TGAGGAAATACCAATAGTTCAGATAAAGATTTACGAAGAACATATTGAACATTTTGATTTTTACAAAAGCGAAATCAATA
CAAGCATTTTCGAAAACTGTACATTCCTTGATTGTAGTTTTGAAGGAGCAAGCTTTGTTGATGTTGTATTCCAAAATTGT
AATCTATCAAACAGTAATTTTACAGATGCATATTTCGAAAGGTGTCAGTTCGTTGACTGTAAATGTATAGGAGTAAACAT
GAGCGGCATTATTTTGAAGCAGATATCTATGCAAGGATCAAATTTTCAATATTCCTATTTCGATAAAGCTAAAATGACGG
ATGTTGCTTTTGAGGATATAGATTTCACTGAGGTATCTATAACTGAAGCCAAATTGAAGAGATTCGAAGTAAAAAACTCC
CACTTTATTAAAAACAACTTCTTTAAGACAATGTTGGCAGGTGTTGATTTTACAAAAAATGAGCTTATTGCTCCAACTGT
ATCTGCACCACCCATTGAATTTCGAGGAGCTAAAATTAGTATGGTTCAGGCGGCTGACTTAATTGGGCTTTGGGGAATCA
TTGTTGATCAGTAA

Upstream 100 bases:

>100_bases
TAATATTGCTTATAAATGTTTGAGGCTTCTAAAATCAGAAAGTGAAGTGTAGTTTTTTTAGGGAGTATATAATTTCTATT
GAAAGGAAGTTAATAAAGCT

Downstream 100 bases:

>100_bases
TTAAATATAATTTTCATTAGGAAACCAATAGGTTATGAGCAAAGCATTTAATCGATATAATTGAACACAATAAATAAAAT
ATGTCTTATGTAGAATCAGG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: Pentapeptide Repeat Protein; Quinolone Resistance Protein; Pentapeptide Repeat Family Protein; Low-Complexity Protein; Pentapeptide Repeats Protein; Pentapeptide Repeats Domain Protein

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSIINPRIPADLIRIEDFSSYAQRYLYEEIPIVQIKIYEEHIEHFDFYKSEINTSIFENCTFLDCSFEGASFVDVVFQNC
NLSNSNFTDAYFERCQFVDCKCIGVNMSGIILKQISMQGSNFQYSYFDKAKMTDVAFEDIDFTEVSITEAKLKRFEVKNS
HFIKNNFFKTMLAGVDFTKNELIAPTVSAPPIEFRGAKISMVQAADLIGLWGIIVDQ

Sequences:

>Translated_217_residues
MSIINPRIPADLIRIEDFSSYAQRYLYEEIPIVQIKIYEEHIEHFDFYKSEINTSIFENCTFLDCSFEGASFVDVVFQNC
NLSNSNFTDAYFERCQFVDCKCIGVNMSGIILKQISMQGSNFQYSYFDKAKMTDVAFEDIDFTEVSITEAKLKRFEVKNS
HFIKNNFFKTMLAGVDFTKNELIAPTVSAPPIEFRGAKISMVQAADLIGLWGIIVDQ
>Mature_216_residues
SIINPRIPADLIRIEDFSSYAQRYLYEEIPIVQIKIYEEHIEHFDFYKSEINTSIFENCTFLDCSFEGASFVDVVFQNCN
LSNSNFTDAYFERCQFVDCKCIGVNMSGIILKQISMQGSNFQYSYFDKAKMTDVAFEDIDFTEVSITEAKLKRFEVKNSH
FIKNNFFKTMLAGVDFTKNELIAPTVSAPPIEFRGAKISMVQAADLIGLWGIIVDQ

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24938; Mature: 24806

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIINPRIPADLIRIEDFSSYAQRYLYEEIPIVQIKIYEEHIEHFDFYKSEINTSIFENC
CCCCCCCCCHHHEEEHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCHHHHCCC
TFLDCSFEGASFVDVVFQNCNLSNSNFTDAYFERCQFVDCKCIGVNMSGIILKQISMQGS
EEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCEEEEEEECCCC
NFQYSYFDKAKMTDVAFEDIDFTEVSITEAKLKRFEVKNSHFIKNNFFKTMLAGVDFTKN
CEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCC
ELIAPTVSAPPIEFRGAKISMVQAADLIGLWGIIVDQ
CEECCCCCCCCEEECCCEEEEEHHHHHHHHHEEEECC
>Mature Secondary Structure 
SIINPRIPADLIRIEDFSSYAQRYLYEEIPIVQIKIYEEHIEHFDFYKSEINTSIFENC
CCCCCCCCHHHEEEHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCHHHHCCC
TFLDCSFEGASFVDVVFQNCNLSNSNFTDAYFERCQFVDCKCIGVNMSGIILKQISMQGS
EEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCEEEEEEECCCC
NFQYSYFDKAKMTDVAFEDIDFTEVSITEAKLKRFEVKNSHFIKNNFFKTMLAGVDFTKN
CEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCC
ELIAPTVSAPPIEFRGAKISMVQAADLIGLWGIIVDQ
CEECCCCCCCCEEECCCEEEEEHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA