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The map label for this gene is rfbU [H]

Identifier: 170756227

GI number: 170756227

Start: 148908

End: 150035

Strand: Reverse

Name: rfbU [H]

Synonym: CLD_0673

Alternate gene names: 170756227

Gene position: 150035-148908 (Counterclockwise)

Preceding gene: 170754536

Following gene: 170756103

Centisome position: 3.79

GC content: 27.13

Gene sequence:

>1128_bases
ATGCGCATAGGTATTGATGGAAGACCTGCTTATTGGTATAGAGGCACTGGAATAGGCACTTACACTTACCAATTAATAAG
TTCTCTAAATAAAGTCGATAAAAAAAATGATTATTTAATTTTTAACCCTGAATTCTCAAATTCTCCTTTAAAATTAAACA
ATAATTTCAATATAAAGAATATAAATGCTCATTCTCCAAAAAATTTTTGGAATGAGGTAAATATACCTGCAATATTAAAA
AATAATAGTATGGACATTTACCACGTGCCCCAAAATGGTGTTGGGCTTCCTAAAAATAAAAATTGTAAATTTATAATAAC
ATTACATGATGTAATTCCTTATAGAATGCCGGAAACTGTAAGCGATAGATATTTAAAAATATTTTCAGAAGAAATACCTA
AAATAGTTTCTTCTGCTGATGGTATAATAACAGTTTCTGATTTTTCAAAGAAAGATATCATGAAATCTTTTAACTATCCT
GAAGACAAAATTTTTGTAACTCATTTAGCTAGTGAAGATATATATATGCCCTTAAATAAAGAGTTTTGTAGAAATATATT
AAAAATGAAATATAACATAAATAAAAATTTTATTTTATATGTAGGTGGATTTAGTCCTAGAAAAAATATATTAGGACTAA
TTGATTCATTTTATAACCTTATAAACATATATAAAAAAGATATTTCCTTAGTTATAGTCGGAAGAAAAGGTAAAATATAC
GAAAAATATATAGAACGAGTTCGTGAGTTAAATATGGAAGATAAAGTATTTTTCCCTGGATTTATATCCGTTAAAGATTT
ACCTTACTTTTATAATTGTGCTGAGATATTTGTATATCCGTCCTTTTATGAAGGTTTTGGATTACCACCTATAGAAGCTA
TGGCTTGTGGTACTCCAGTAATAACATCTAATGTAACATCTATACCAGAAATAACAAAAGATGCAGCAATGCTAATAAAT
CCATATGATACTGATAGCATATGTAAAGCTATGTATACTGCATTATCTAATGAAAACATGAAAAACATATTAATAAAACG
AGGCTTAAATAGGACCTCCCAACTTACTTGGAATAATTGCGCTAAAAGCACTTTATTAGCCTATAAAAAAATACTATGCT
CTAATTAG

Upstream 100 bases:

>100_bases
TAAAACTATATGTATATTATTATAGTTTTAGAAGTAATTTAACACTTTTCTCTTTAAATTAATATAATGAATTATGATGA
ATTAAGAAAGGAAAATTTTT

Downstream 100 bases:

>100_bases
GCTCCAGTCTCCCCTTAACTGGAGTCTTAAATAATTTTTAGTTATAAAATTTGTAATTATCTGTATATCATATAAAAATT
CATCTAAAATTTTAAAAAAC

Product: glycosyl transferase, group 1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKNINAHSPKNFWNEVNIPAILK
NNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETVSDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYP
EDKIFVTHLASEDIYMPLNKEFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDSFYNLINIYKKDISLVIVGRKGKIY
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPVITSNVTSIPEITKDAAMLIN
PYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNCAKSTLLAYKKILCSN

Sequences:

>Translated_375_residues
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKNINAHSPKNFWNEVNIPAILK
NNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETVSDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYP
EDKIFVTHLASEDIYMPLNKEFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDSFYNLINIYKKDISLVIVGRKGKIY
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPVITSNVTSIPEITKDAAMLIN
PYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNCAKSTLLAYKKILCSN
>Mature_375_residues
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKNINAHSPKNFWNEVNIPAILK
NNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETVSDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYP
EDKIFVTHLASEDIYMPLNKEFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDSFYNLINIYKKDISLVIVGRKGKIY
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPVITSNVTSIPEITKDAAMLIN
PYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNCAKSTLLAYKKILCSN

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 43097; Mature: 43097

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKN
CEECCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEECCCCCEEE
INAHSPKNFWNEVNIPAILKNNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETV
CCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEHHCCCCCCCCHH
SDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYPEDKIFVTHLASEDIYMPLNK
HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCEEEEEEECCCCEEECCCH
EFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDSFYNLINIYKKDISLVIVGRKGKIY
HHHHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHH
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPV
HHHHHHHHHCCCCCCEECCCEEEEECCCCEECEEEEEEECCHHCCCCCCCHHHHHCCCCE
ITSNVTSIPEITKDAAMLINPYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNC
EECCCCCCCHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHH
AKSTLLAYKKILCSN
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKN
CEECCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEECCCCCEEE
INAHSPKNFWNEVNIPAILKNNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETV
CCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEHHCCCCCCCCHH
SDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYPEDKIFVTHLASEDIYMPLNK
HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCEEEEEEECCCCEEECCCH
EFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDSFYNLINIYKKDISLVIVGRKGKIY
HHHHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHH
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPV
HHHHHHHHHCCCCCCEECCCEEEEECCCCEECEEEEEEECCHHCCCCCCCHHHHHCCCCE
ITSNVTSIPEITKDAAMLINPYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNC
EECCCCCCCHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHH
AKSTLLAYKKILCSN
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]