| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756157
Identifier: 170756157
GI number: 170756157
Start: 3871972
End: 3873099
Strand: Reverse
Name: 170756157
Synonym: CLD_0928
Alternate gene names: NA
Gene position: 3873099-3871972 (Counterclockwise)
Preceding gene: 170755275
Following gene: 170754861
Centisome position: 97.85
GC content: 28.1
Gene sequence:
>1128_bases TTGTATTATAGAAATTTTGCAAAAAAAATAATAATATTTTTAATTTTTACTACTACCATTTCATTATTTGGATGTAAGAA AAATAAAGAAGATACTAAGGTAACTAATGACTTTGACATAAAAATAGCAACAAATTTATTGAATTCTTATATGGAGAGCC TAATTGAAGAAAATATGGAAGGAGCTCAAAAGCTATACTCTAAGAAATTAAAAAAGGATAAAATAAAAAAGGAGAATAAG GACGTAAAAATAAAGGGTTATACTACAGAGGAGATAAATGAAGTGGGAAAATCAGCACTATTTGTAGCAAAAGTAGTCAG TGTTAATGTCAAGGAACCCTATACCTCTGTTGAAGAATACAAAATAAGGGTAATAAAAGAAGAAAATGAATATAAAATAG ATGAAGTAAATATAAGTATAGACAAAGAAGCATTTACAAAAAATAATAGAATAAGATATAGAAATAAAAATAATGTTAAA ACGGAGTTAATAATAAAGCCATCAACCTTGCCTGATTATGCATATGCAAAGGATGATAAGGCTAATATAGAAAAGCTAAT TGTGCCTAAAAAAAATATAGGACCTATGAGTCTTTCTTATAGTGAAAATTTTATAGCAATATCAACTTATGATGAAAACT CTTATATTGGAATAATAACAATAGATGAATCAAAGGCTGTCCAAGGGGGGCAAGATCAAGGAGATCAAGGAAGCCAAGGA GATCAAGGAGGAGCTGGGGGTGGTGAAACAGGGCAAAAGGGAACAGATATAATGGAGGAGATTGGAGAAAAGCCAATAGG AAAAGAAATATCTTCCTTAGATTTATTAAAGGGGAGTAAAATAGATTTTATGGTGTTTTCTCCTGATGAAAAATTTATAG CAGTTCAATATGAAACTAGTGATAAAACAAAAAATATAAGAATATATCAAGCTGATAGTGCAGACATAATACCTTTTAAG ATGGAGGATAAATTTCCTTTAAGTAAAGTAAATGTAACATTGTCTTCTTTTGCTACAGATTCTATAATATTTAATGTATC TAGTAAAGAAAAAAATGATAAAAATTCAAATGAATTTATAGGTAAGTGGCAACTGGATCTAAAAGAATTTAAAGTTAAAA AAATGTAG
Upstream 100 bases:
>100_bases AATATATATATAAAAATAAAAATAATGATTTTTAATTAAATTTTCTTTTTAAGGAGAAAATAAAAGTAAATGGTGAATAA ATAAGGGAGGGAAGAAAATA
Downstream 100 bases:
>100_bases TTGTTTTGAAAAAAAAGTATCTGTGACATATAATATTCACAGATACTTTTTTTTGGAGGAATTTATTATGGAAAGAAAAT GGTATGATAAGCCATATCAT
Product: putative phage head-tail adaptor
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MYYRNFAKKIIIFLIFTTTISLFGCKKNKEDTKVTNDFDIKIATNLLNSYMESLIEENMEGAQKLYSKKLKKDKIKKENK DVKIKGYTTEEINEVGKSALFVAKVVSVNVKEPYTSVEEYKIRVIKEENEYKIDEVNISIDKEAFTKNNRIRYRNKNNVK TELIIKPSTLPDYAYAKDDKANIEKLIVPKKNIGPMSLSYSENFIAISTYDENSYIGIITIDESKAVQGGQDQGDQGSQG DQGGAGGGETGQKGTDIMEEIGEKPIGKEISSLDLLKGSKIDFMVFSPDEKFIAVQYETSDKTKNIRIYQADSADIIPFK MEDKFPLSKVNVTLSSFATDSIIFNVSSKEKNDKNSNEFIGKWQLDLKEFKVKKM
Sequences:
>Translated_375_residues MYYRNFAKKIIIFLIFTTTISLFGCKKNKEDTKVTNDFDIKIATNLLNSYMESLIEENMEGAQKLYSKKLKKDKIKKENK DVKIKGYTTEEINEVGKSALFVAKVVSVNVKEPYTSVEEYKIRVIKEENEYKIDEVNISIDKEAFTKNNRIRYRNKNNVK TELIIKPSTLPDYAYAKDDKANIEKLIVPKKNIGPMSLSYSENFIAISTYDENSYIGIITIDESKAVQGGQDQGDQGSQG DQGGAGGGETGQKGTDIMEEIGEKPIGKEISSLDLLKGSKIDFMVFSPDEKFIAVQYETSDKTKNIRIYQADSADIIPFK MEDKFPLSKVNVTLSSFATDSIIFNVSSKEKNDKNSNEFIGKWQLDLKEFKVKKM >Mature_375_residues MYYRNFAKKIIIFLIFTTTISLFGCKKNKEDTKVTNDFDIKIATNLLNSYMESLIEENMEGAQKLYSKKLKKDKIKKENK DVKIKGYTTEEINEVGKSALFVAKVVSVNVKEPYTSVEEYKIRVIKEENEYKIDEVNISIDKEAFTKNNRIRYRNKNNVK TELIIKPSTLPDYAYAKDDKANIEKLIVPKKNIGPMSLSYSENFIAISTYDENSYIGIITIDESKAVQGGQDQGDQGSQG DQGGAGGGETGQKGTDIMEEIGEKPIGKEISSLDLLKGSKIDFMVFSPDEKFIAVQYETSDKTKNIRIYQADSADIIPFK MEDKFPLSKVNVTLSSFATDSIIFNVSSKEKNDKNSNEFIGKWQLDLKEFKVKKM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42544; Mature: 42544
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYYRNFAKKIIIFLIFTTTISLFGCKKNKEDTKVTNDFDIKIATNLLNSYMESLIEENME CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH GAQKLYSKKLKKDKIKKENKDVKIKGYTTEEINEVGKSALFVAKVVSVNVKEPYTSVEEY HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCHHHEEEEHEEEEECCCCCCCCCEE KIRVIKEENEYKIDEVNISIDKEAFTKNNRIRYRNKNNVKTELIIKPSTLPDYAYAKDDK EEEEEECCCCEEEEEEEEEECHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCC ANIEKLIVPKKNIGPMSLSYSENFIAISTYDENSYIGIITIDESKAVQGGQDQGDQGSQG CCCEEEECCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCC DQGGAGGGETGQKGTDIMEEIGEKPIGKEISSLDLLKGSKIDFMVFSPDEKFIAVQYETS CCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEEECC DKTKNIRIYQADSADIIPFKMEDKFPLSKVNVTLSSFATDSIIFNVSSKEKNDKNSNEFI CCCCEEEEEECCCCCEEEEECCCCCCCHHEEEEHHHCCCCEEEEEECCCCCCCCCCCCEE GKWQLDLKEFKVKKM EEEEECHHHHEECCC >Mature Secondary Structure MYYRNFAKKIIIFLIFTTTISLFGCKKNKEDTKVTNDFDIKIATNLLNSYMESLIEENME CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH GAQKLYSKKLKKDKIKKENKDVKIKGYTTEEINEVGKSALFVAKVVSVNVKEPYTSVEEY HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCHHHEEEEHEEEEECCCCCCCCCEE KIRVIKEENEYKIDEVNISIDKEAFTKNNRIRYRNKNNVKTELIIKPSTLPDYAYAKDDK EEEEEECCCCEEEEEEEEEECHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCC ANIEKLIVPKKNIGPMSLSYSENFIAISTYDENSYIGIITIDESKAVQGGQDQGDQGSQG CCCEEEECCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCC DQGGAGGGETGQKGTDIMEEIGEKPIGKEISSLDLLKGSKIDFMVFSPDEKFIAVQYETS CCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEEECC DKTKNIRIYQADSADIIPFKMEDKFPLSKVNVTLSSFATDSIIFNVSSKEKNDKNSNEFI CCCCEEEEEECCCCCEEEEECCCCCCCHHEEEEHHHCCCCEEEEEECCCCCCCCCCCCEE GKWQLDLKEFKVKKM EEEEECHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA