| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is pgcA [H]
Identifier: 170756131
GI number: 170756131
Start: 3932029
End: 3933750
Strand: Reverse
Name: pgcA [H]
Synonym: CLD_0855
Alternate gene names: 170756131
Gene position: 3933750-3932029 (Counterclockwise)
Preceding gene: 170756938
Following gene: 170755260
Centisome position: 99.38
GC content: 29.21
Gene sequence:
>1722_bases ATGGATTACAAAAAAGTATATAAAGAATGGTTAGATAATGATTATATTGATGAAGATATAAAAAAAGAATTAAAGGAGAT AATAAATAATGAAAAGGAAATAGAAGATAGATTTTATAAAGAATTAGAATTTGGAACTGCAGGCCTTAGAGGAAAAATCG GAGCAGGTACAAATAGAATGAATATATACAATATATCTAAGGTTACTCAGGGATTAGCAGATTATATAACAGAAAAAGGT GAAGAATATATAAATAGGGGTGTTGCTATAGCTTTTGATTGCAGACATTATTCAAAAGAATTTGCTAAAACTGCAGCCTT AGTTTTGGCTGGTAATGGAATAAAGAGTTATTTATTTGAAGATTTAAGACCAACGCCAGAATTATCTTTTGCAGTTAGAA AATTGAATACGGCTGCAGGTATAGTTATAACTGCAAGTCATAATCCAAAGGATTATAATGGTTATAAAGTATATTGGGAA GATGGTGCTCAAGTTTTAACTCAAATAGCAAATGGTATTACTGAGAAAATAAAATCTATTGGTAAATTTAGTGATATAAA AACTATGAGTGAGGAAAAAGCTTTAAAAAGTGGGTTATTAAATATATTAGGAGAAGATATAGATTTTGAATATATAGAAA GGGTTAAATCTTTAAGTATAAGAGAAGATATCGATAAGGATATAAAAGTTATTTATACACCTTTAAATGGAACAGGAAAT ATTCCTGTTAGACGTGTTTTAAGAGAAAGAGGGTTTACTAACATTATAGTAGTTCCAGAGCAGGAAAACCCTGATCCAGA CTTTACAACAGTAGGATATCCAAATCCAGAGGATACAAAAGCATTTAGATATGCAGAAAACTTAGGAAAAAAAGTAGATG CAGAATTACTTATAGCAACAGATCCAGATTGTGATAGATTAGCTATAGAGGTTAAAGATAAAAATGGTGAGTATTTAGCC TTTAATGGTAATCAAACAGGAGCTATTCTTATAAATTATATAGTATCAAATATGAAAGAGATGGGTAAATTACCTAAGGG TGCTGCTATAGTTAAATCCATAGTTACTGGGGATTTAGGTAAAGTTATTGGAGAAGAATACGGAGTAGAAACCTATGAAG CATTAACTGGATTTAAAAACATATGTGGTAAAATACCTAATTTAAAAGAAGAAGGTAAAGAATTTATATTCGGATATGAA GAAAGTATAGGGTATGTTACAGGTACATTTGTTAGAGATAAAGATGGAGTAAGTTCAAGTATGCTTTTATGTGAGGCAGC AGCTTATTATAAAACTAAGGGTAAAACATTAATAGATGTACTTAATGAAATATATGAAAAGCATGGATATTATAGAGAAA AGCAAATATCACTAATATTAGAAGGGATAGAGGGTAAAAAGAGAATAGATAGAATGATGGAATCATATAGGAAAAGTTTC CCGAAGGAAATAGCAGGAGCAAAGCTTTTAACTTATATAGATTATCAGGATAGAATAGAATACGATATTATAAAAAATGA TAGAAAGCCATGTAGAATACCTAGATCAAATGTATTAAGATTCTTTTTAGATGATGGCAGTTGGTATGCAGTAAGGCCAT CAGGTACAGAACCTAAAATAAAATTATATGTATATACAAAAGGTAAAAGTATTAAAGCTGCTGAAGAAAAAATAAAAGCT ATAGAAAAGGAAGTTTTAGATAAACTTAATTCAGTAAAATAG
Upstream 100 bases:
>100_bases GAGTATATAAAATAATATTATTTAAGAAGGAAATACATAAAAAATATTGAAATTAATAATTAATGGAATAAAAGCTTTCA GTTAAGAGGAGAGATAATAT
Downstream 100 bases:
>100_bases ATTAATTTAATAAAATTTTATATAATAGTAAGATATTTTAATATTATGATATGTGTTTTTGATTAAAAATAAAGAAAAGA TTATTTTATAGAAATAATAA
Product: phosphoglucomutase/phosphomannomutase family protein
Products: NA
Alternate protein names: PGM; Alpha-phosphoglucomutase; Glucose phosphomutase [H]
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MDYKKVYKEWLDNDYIDEDIKKELKEIINNEKEIEDRFYKELEFGTAGLRGKIGAGTNRMNIYNISKVTQGLADYITEKG EEYINRGVAIAFDCRHYSKEFAKTAALVLAGNGIKSYLFEDLRPTPELSFAVRKLNTAAGIVITASHNPKDYNGYKVYWE DGAQVLTQIANGITEKIKSIGKFSDIKTMSEEKALKSGLLNILGEDIDFEYIERVKSLSIREDIDKDIKVIYTPLNGTGN IPVRRVLRERGFTNIIVVPEQENPDPDFTTVGYPNPEDTKAFRYAENLGKKVDAELLIATDPDCDRLAIEVKDKNGEYLA FNGNQTGAILINYIVSNMKEMGKLPKGAAIVKSIVTGDLGKVIGEEYGVETYEALTGFKNICGKIPNLKEEGKEFIFGYE ESIGYVTGTFVRDKDGVSSSMLLCEAAAYYKTKGKTLIDVLNEIYEKHGYYREKQISLILEGIEGKKRIDRMMESYRKSF PKEIAGAKLLTYIDYQDRIEYDIIKNDRKPCRIPRSNVLRFFLDDGSWYAVRPSGTEPKIKLYVYTKGKSIKAAEEKIKA IEKEVLDKLNSVK
Sequences:
>Translated_573_residues MDYKKVYKEWLDNDYIDEDIKKELKEIINNEKEIEDRFYKELEFGTAGLRGKIGAGTNRMNIYNISKVTQGLADYITEKG EEYINRGVAIAFDCRHYSKEFAKTAALVLAGNGIKSYLFEDLRPTPELSFAVRKLNTAAGIVITASHNPKDYNGYKVYWE DGAQVLTQIANGITEKIKSIGKFSDIKTMSEEKALKSGLLNILGEDIDFEYIERVKSLSIREDIDKDIKVIYTPLNGTGN IPVRRVLRERGFTNIIVVPEQENPDPDFTTVGYPNPEDTKAFRYAENLGKKVDAELLIATDPDCDRLAIEVKDKNGEYLA FNGNQTGAILINYIVSNMKEMGKLPKGAAIVKSIVTGDLGKVIGEEYGVETYEALTGFKNICGKIPNLKEEGKEFIFGYE ESIGYVTGTFVRDKDGVSSSMLLCEAAAYYKTKGKTLIDVLNEIYEKHGYYREKQISLILEGIEGKKRIDRMMESYRKSF PKEIAGAKLLTYIDYQDRIEYDIIKNDRKPCRIPRSNVLRFFLDDGSWYAVRPSGTEPKIKLYVYTKGKSIKAAEEKIKA IEKEVLDKLNSVK >Mature_573_residues MDYKKVYKEWLDNDYIDEDIKKELKEIINNEKEIEDRFYKELEFGTAGLRGKIGAGTNRMNIYNISKVTQGLADYITEKG EEYINRGVAIAFDCRHYSKEFAKTAALVLAGNGIKSYLFEDLRPTPELSFAVRKLNTAAGIVITASHNPKDYNGYKVYWE DGAQVLTQIANGITEKIKSIGKFSDIKTMSEEKALKSGLLNILGEDIDFEYIERVKSLSIREDIDKDIKVIYTPLNGTGN IPVRRVLRERGFTNIIVVPEQENPDPDFTTVGYPNPEDTKAFRYAENLGKKVDAELLIATDPDCDRLAIEVKDKNGEYLA FNGNQTGAILINYIVSNMKEMGKLPKGAAIVKSIVTGDLGKVIGEEYGVETYEALTGFKNICGKIPNLKEEGKEFIFGYE ESIGYVTGTFVRDKDGVSSSMLLCEAAAYYKTKGKTLIDVLNEIYEKHGYYREKQISLILEGIEGKKRIDRMMESYRKSF PKEIAGAKLLTYIDYQDRIEYDIIKNDRKPCRIPRSNVLRFFLDDGSWYAVRPSGTEPKIKLYVYTKGKSIKAAEEKIKA IEKEVLDKLNSVK
Specific function: Catalyzes the interconversion between glucose-6- phosphate and alpha-glucose-1-phosphate. This is the first step in the biosynthesis of diglucosyl-diacylglycerol (Glc2-DAG), i.e. the predominant glycolipid found in B.subtilis membrane, which is also used
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI63055049, Length=561, Percent_Identity=33.8680926916221, Blast_Score=305, Evalue=6e-83, Organism=Homo sapiens, GI31377548, Length=585, Percent_Identity=33.1623931623932, Blast_Score=278, Evalue=9e-75, Organism=Caenorhabditis elegans, GI71993870, Length=589, Percent_Identity=33.616298811545, Blast_Score=282, Evalue=4e-76, Organism=Caenorhabditis elegans, GI71993878, Length=321, Percent_Identity=34.8909657320872, Blast_Score=171, Evalue=7e-43, Organism=Saccharomyces cerevisiae, GI6323934, Length=550, Percent_Identity=32.9090909090909, Blast_Score=248, Evalue=2e-66, Organism=Drosophila melanogaster, GI20129809, Length=534, Percent_Identity=30.7116104868914, Blast_Score=252, Evalue=6e-67, Organism=Drosophila melanogaster, GI24651977, Length=429, Percent_Identity=33.1002331002331, Blast_Score=241, Evalue=7e-64, Organism=Drosophila melanogaster, GI24653722, Length=466, Percent_Identity=32.8326180257511, Blast_Score=212, Evalue=6e-55, Organism=Drosophila melanogaster, GI17864244, Length=549, Percent_Identity=23.6794171220401, Blast_Score=72, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 64959; Mature: 64959
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYKKVYKEWLDNDYIDEDIKKELKEIINNEKEIEDRFYKELEFGTAGLRGKIGAGTNRM CCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE NIYNISKVTQGLADYITEKGEEYINRGVAIAFDCRHYSKEFAKTAALVLAGNGIKSYLFE EEEEHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHHEEECCCHHHHHHH DLRPTPELSFAVRKLNTAAGIVITASHNPKDYNGYKVYWEDGAQVLTQIANGITEKIKSI HCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH GKFSDIKTMSEEKALKSGLLNILGEDIDFEYIERVKSLSIREDIDKDIKVIYTPLNGTGN HCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC IPVRRVLRERGFTNIIVVPEQENPDPDFTTVGYPNPEDTKAFRYAENLGKKVDAELLIAT CHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEC DPDCDRLAIEVKDKNGEYLAFNGNQTGAILINYIVSNMKEMGKLPKGAAIVKSIVTGDLG CCCCCEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH KVIGEEYGVETYEALTGFKNICGKIPNLKEEGKEFIFGYEESIGYVTGTFVRDKDGVSSS HHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCHHEEEEHHHCCCCEEEEEEECCCCCCHH MLLCEAAAYYKTKGKTLIDVLNEIYEKHGYYREKQISLILEGIEGKKRIDRMMESYRKSF HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC PKEIAGAKLLTYIDYQDRIEYDIIKNDRKPCRIPRSNVLRFFLDDGSWYAVRPSGTEPKI CHHHCCCCEEEEECHHHCCEEHHHCCCCCCCCCCHHHEEEEEEECCCEEEECCCCCCCEE KLYVYTKGKSIKAAEEKIKAIEKEVLDKLNSVK EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDYKKVYKEWLDNDYIDEDIKKELKEIINNEKEIEDRFYKELEFGTAGLRGKIGAGTNRM CCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE NIYNISKVTQGLADYITEKGEEYINRGVAIAFDCRHYSKEFAKTAALVLAGNGIKSYLFE EEEEHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHHEEECCCHHHHHHH DLRPTPELSFAVRKLNTAAGIVITASHNPKDYNGYKVYWEDGAQVLTQIANGITEKIKSI HCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH GKFSDIKTMSEEKALKSGLLNILGEDIDFEYIERVKSLSIREDIDKDIKVIYTPLNGTGN HCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC IPVRRVLRERGFTNIIVVPEQENPDPDFTTVGYPNPEDTKAFRYAENLGKKVDAELLIAT CHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEC DPDCDRLAIEVKDKNGEYLAFNGNQTGAILINYIVSNMKEMGKLPKGAAIVKSIVTGDLG CCCCCEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH KVIGEEYGVETYEALTGFKNICGKIPNLKEEGKEFIFGYEESIGYVTGTFVRDKDGVSSS HHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCHHEEEEHHHCCCCEEEEEEECCCCCCHH MLLCEAAAYYKTKGKTLIDVLNEIYEKHGYYREKQISLILEGIEGKKRIDRMMESYRKSF HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC PKEIAGAKLLTYIDYQDRIEYDIIKNDRKPCRIPRSNVLRFFLDDGSWYAVRPSGTEPKI CHHHCCCCEEEEECHHHCCEEHHHCCCCCCCCCCHHHEEEEEEECCCEEEECCCCCCCEE KLYVYTKGKSIKAAEEKIKAIEKEVLDKLNSVK EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 2127799 [H]