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The map label for this gene is patH [H]

Identifier: 170756070

GI number: 170756070

Start: 1567161

End: 1567979

Strand: Direct

Name: patH [H]

Synonym: CLD_3137

Alternate gene names: 170756070

Gene position: 1567161-1567979 (Clockwise)

Preceding gene: 170757130

Following gene: 170754761

Centisome position: 39.59

GC content: 29.79

Gene sequence:

>819_bases
TTGAAAAAGAAAAAATTATCTTTAATTTTAGTATCAGCGCTAGCGGTAATAACTCTTTTAGCTGGTTGTGGAAAGGAAAA
AGCTACTTCAACAGAGGGGCAAAATACAGGAAATAGCAAGAGTGAAAAGAAAATTATAGTAGGAACATCACCAGATTATT
ACCCATGGTGTTATACAGAAGCAGGAAAACTTCAAGGATTTGAAATTGATGTTTGGAATGAAATAGGGAAAAAAGCAGGA
TACGATATTGAATTTAAACAATCAAAATTTAGTGGATTATTTGGAATGTTGGATGCAGGTCAAATAGATACCGTTGCTCA
TCAAATATCAACTACAGAAGAAAGAAGAAAAAAATATGATTTTACAGAAACTTATGCTTATAGTGGATATAGTTTTGTAG
TAAACAAGGATAAAGATATTAAAAGTTTAGAGGATTTAAAAGGTAAAAAAGTTGGATGTACCCTAGGAGGTAATGGAGAA
AAAACTTTGAAAAAATTAAATGAGGAAAAAGGTTTAAATATAAAGGTTTTAACTTATGATCAAACTCCAATGGAGAAAGA
TGTAGAAATTGGAAGACTTGATGCAGCGTGGATTGGAACTGTTAAGGCTAAAACAGTTATAGAAAAAGAAAAGATGGATC
TAAAACTTTATGATCCAAAATATGTTTTCGAGATTAATCAATATCCATTCAAAAAAGACGTAAAAAATAAAAAAATGCTA
GAAGATATAAATAAAGCTATAAAGGATATGATGGCTGATGGTACAATGAGTAAACTATCACAAAAGTGGTTTAAACTTGA
TATAACTAAGAAGGAATAG

Upstream 100 bases:

>100_bases
TAAAGATTTATAGAATGTAAAATCTAAAAGTAATAATTTTCAAAAAAGGTTTATATGATTTTTATAAATTTTAAAGTGAA
ATTATGGGGGGAAAATAAAA

Downstream 100 bases:

>100_bases
GTGTGGTAGTATATGATTTTTGACCTAGAATATTTTAATAAATTAGTGCCTTTAATGCTTAAACATTTGAAAGTTACTTT
TATAATTTCTTTTTTAGCAT

Product: amino acid ABC transporter, amino acid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKKKKLSLILVSALAVITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTEAGKLQGFEIDVWNEIGKKAG
YDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYDFTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGE
KTLKKLNEEKGLNIKVLTYDQTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDVKNKKML
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE

Sequences:

>Translated_272_residues
MKKKKLSLILVSALAVITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTEAGKLQGFEIDVWNEIGKKAG
YDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYDFTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGE
KTLKKLNEEKGLNIKVLTYDQTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDVKNKKML
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE
>Mature_272_residues
MKKKKLSLILVSALAVITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTEAGKLQGFEIDVWNEIGKKAG
YDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYDFTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGE
KTLKKLNEEKGLNIKVLTYDQTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDVKNKKML
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=274, Percent_Identity=32.4817518248175, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1788648, Length=236, Percent_Identity=30.9322033898305, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787031, Length=236, Percent_Identity=28.3898305084746, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787085, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788649, Length=233, Percent_Identity=27.4678111587983, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 30761; Mature: 30761

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKKLSLILVSALAVITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECC
AGKLQGFEIDVWNEIGKKAGYDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYD
CCCCCCEEEEHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
FTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGEKTLKKLNEEKGLNIKVLTYD
CHHHEEECCEEEEEECCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEC
QTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDVKNKKML
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCHHHCCHHHHH
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE
HHHHHHHHHHHCCCHHHHHHHHHEEEEEECCC
>Mature Secondary Structure
MKKKKLSLILVSALAVITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECC
AGKLQGFEIDVWNEIGKKAGYDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYD
CCCCCCEEEEHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
FTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGEKTLKKLNEEKGLNIKVLTYD
CHHHEEECCEEEEEECCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEC
QTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDVKNKKML
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCHHHCCHHHHH
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE
HHHHHHHHHHHCCCHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA