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The map label for this gene is ydeE [H]

Identifier: 170756062

GI number: 170756062

Start: 987898

End: 988995

Strand: Direct

Name: ydeE [H]

Synonym: CLD_3687

Alternate gene names: 170756062

Gene position: 987898-988995 (Clockwise)

Preceding gene: 170754239

Following gene: 170756895

Centisome position: 24.96

GC content: 32.7

Gene sequence:

>1098_bases
ATGATAGACACCAATATGAAAAGAATACTAGATTTTGTGGAGCAGAACTTAACAGAGGATTTTTCTCTAAACAAGCTGGC
AAGGCATTGCAATTTTTCACCCTATTATTGTTCTATTATTTTTCATAGGTATTTTGGTGAAACCATGAAAAGCTACATGC
AAAAGCGACGCCTGCTTTGTGCTGCAAAGGAGCTTAAAAGTACTAATGACAGAATTGTTGATATTGCAATAAAATACGGT
TATTCATCCCAAGAGGCATTTTCAAGAGCGTTTTCTGATATGATTGGAATGGCGCCGAAAAGGTTTCGTGAAAATCCTCT
GCCTATTGCTGTTTATCAGAAAAATAGTTCTCCGCCATTTCAGAATAAGGAGAACACGGCAATGAAAAATGAAACTATTA
AGAATGTACAAGGTGAAATTGAAAGAAATTATCCATTAAAAACATTGCATATTTTAAATGGCTTGTGTATGCTTGATTCT
TTTCAAAAAAATGACCTTATGAGTGAAAAAGCCATATATATTCCATTTAATGAAGCTATGTGTTGGGGTGAAACGAATGA
AAAAATCTTCTCATCTGAATTTATCGAAAAAAGAGCGTATTCTCTCAACTCTACACTAGAAGAGTATAAAAAAATTGTAA
TAGAGCCGCTAAAGCCGTTGTTTGATGAACAGTTTGACATTATCGTTTTATGGTTTGGTGACGATATGTTCTGCCAGATG
AACTTTATTACGATTCTTGCGTATTTGGAACAAATTTATTTTGATGGTGATGTACTTTTTTGCATGGCACAAGAGCAAAC
AGATAAAATGTTATCAGATGCTGTGGAAATTGATATAGATGGTTATAATTATATCTATAAAACTATACTTTGCGATAGAA
AAAAATGTGATGTAAAATTGCTACCCGTCACTTATCAGGCAATGAATTTATATCTTTGCTATCGAGAAAAAAATAGCGAT
ATCATACGCTATATCAAAAGTAATCTTAATAAAGAAAATATCGTAGGAGAATTACTTACACTATTTCCTCAGTACGGACT
TGGAGATTTACAATATAAGTGGATGATTGAAGAAATAAAGAAGGGAAAGGCTATATGA

Upstream 100 bases:

>100_bases
TGGTTACGAAAGAACATTGATTAAGATATTTAATATCACAATTAATATCAAAATAAAATATTGGAGATATGTTACTATTT
TTAGAAAGGAGGAATATTTG

Downstream 100 bases:

>100_bases
AAGTTGAACCTTATAAAGAGTCATTAGAGAATAATTTAAAGAAACCTTTTATAATATAAAATTATAATAAGAGTAAATAA
AAATAACGGAGGAGAACCAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MIDTNMKRILDFVEQNLTEDFSLNKLARHCNFSPYYCSIIFHRYFGETMKSYMQKRRLLCAAKELKSTNDRIVDIAIKYG
YSSQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPFQNKENTAMKNETIKNVQGEIERNYPLKTLHILNGLCMLDS
FQKNDLMSEKAIYIPFNEAMCWGETNEKIFSSEFIEKRAYSLNSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQM
NFITILAYLEQIYFDGDVLFCMAQEQTDKMLSDAVEIDIDGYNYIYKTILCDRKKCDVKLLPVTYQAMNLYLCYREKNSD
IIRYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIKKGKAI

Sequences:

>Translated_365_residues
MIDTNMKRILDFVEQNLTEDFSLNKLARHCNFSPYYCSIIFHRYFGETMKSYMQKRRLLCAAKELKSTNDRIVDIAIKYG
YSSQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPFQNKENTAMKNETIKNVQGEIERNYPLKTLHILNGLCMLDS
FQKNDLMSEKAIYIPFNEAMCWGETNEKIFSSEFIEKRAYSLNSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQM
NFITILAYLEQIYFDGDVLFCMAQEQTDKMLSDAVEIDIDGYNYIYKTILCDRKKCDVKLLPVTYQAMNLYLCYREKNSD
IIRYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIKKGKAI
>Mature_365_residues
MIDTNMKRILDFVEQNLTEDFSLNKLARHCNFSPYYCSIIFHRYFGETMKSYMQKRRLLCAAKELKSTNDRIVDIAIKYG
YSSQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPFQNKENTAMKNETIKNVQGEIERNYPLKTLHILNGLCMLDS
FQKNDLMSEKAIYIPFNEAMCWGETNEKIFSSEFIEKRAYSLNSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQM
NFITILAYLEQIYFDGDVLFCMAQEQTDKMLSDAVEIDIDGYNYIYKTILCDRKKCDVKLLPVTYQAMNLYLCYREKNSD
IIRYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIKKGKAI

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=95, Percent_Identity=29.4736842105263, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790497, Length=98, Percent_Identity=29.5918367346939, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 42953; Mature: 42953

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDTNMKRILDFVEQNLTEDFSLNKLARHCNFSPYYCSIIFHRYFGETMKSYMQKRRLLC
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKELKSTNDRIVDIAIKYGYSSQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPF
HHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCC
QNKENTAMKNETIKNVQGEIERNYPLKTLHILNGLCMLDSFQKNDLMSEKAIYIPFNEAM
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHCCCHHCCCCCCCEEEEECCCCE
CWGETNEKIFSSEFIEKRAYSLNSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQM
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEHH
NFITILAYLEQIYFDGDVLFCMAQEQTDKMLSDAVEIDIDGYNYIYKTILCDRKKCDVKL
HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHEEEEECCHHHHHHHHHCCCCCCCEEE
LPVTYQAMNLYLCYREKNSDIIRYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIK
EEEEEEEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
KGKAI
CCCCC
>Mature Secondary Structure
MIDTNMKRILDFVEQNLTEDFSLNKLARHCNFSPYYCSIIFHRYFGETMKSYMQKRRLLC
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKELKSTNDRIVDIAIKYGYSSQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPF
HHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCC
QNKENTAMKNETIKNVQGEIERNYPLKTLHILNGLCMLDSFQKNDLMSEKAIYIPFNEAM
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHCCCHHCCCCCCCEEEEECCCCE
CWGETNEKIFSSEFIEKRAYSLNSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQM
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEHH
NFITILAYLEQIYFDGDVLFCMAQEQTDKMLSDAVEIDIDGYNYIYKTILCDRKKCDVKL
HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHEEEEECCHHHHHHHHHCCCCCCCEEE
LPVTYQAMNLYLCYREKNSDIIRYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIK
EEEEEEEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
KGKAI
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]