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The map label for this gene is sigV [H]

Identifier: 170756038

GI number: 170756038

Start: 947733

End: 948245

Strand: Direct

Name: sigV [H]

Synonym: CLD_3736

Alternate gene names: 170756038

Gene position: 947733-948245 (Clockwise)

Preceding gene: 170754944

Following gene: 170754494

Centisome position: 23.94

GC content: 26.51

Gene sequence:

>513_bases
ATGAATACAGAGGAGTTGGCTATTAAAGCAAAAAGTGGAGATGAAAACGCTTTTTGCGAACTTATAAAAATTAATAAAGA
GGTTTTATATAAAACAGCGTTTTATTATACAAAGAACGAACATGACTCATTAGAAATATTAGATGATACCGTTTATAAAG
CCTATAAATCAATTAAAAAATTAAAACAGGAAAAATATTTTAATACTTGGCTAATGAGAATACTCATAAATAACTGTATC
ACCTACATAAATAAAAGAAAAAGGTTGATATTCTTTAGAAAAAATATTGATATTATTGAAAAACATGAATCAACTGATAA
CAGAGAAGGATTATTGGATTTATATAAAGCTATTGATACATTAGAGGATAAGTTTAAGATGATAATAATACTTAGGTACT
TTAATGATTTAACTGTTCCTCAGATAGCTGATATTATGGACTACCCTATCGGGACAGTAAAGACTTATATCCATAAAGCT
TTAAAACAACTAAGAATTGAATTGGAGGTATAG

Upstream 100 bases:

>100_bases
AAATTTGAAAATAAATAAAACGAAAGTATAGTTTGAAATGTCTAATAGATAGCAGGTTATTATCAGTAATAATATTATAT
CTTACTTGGAGGATTACTAT

Downstream 100 bases:

>100_bases
GAGCATGGATTATGACAAGAAATCTTTTAGAGAAAAACTAGAATTAATAGAAGTTCCAGAGGAAGTTGATTTAGTTATAG
ATGAAGCTATTAAGAGAGCT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MNTEELAIKAKSGDENAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKKLKQEKYFNTWLMRILINNCI
TYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDTLEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKA
LKQLRIELEV

Sequences:

>Translated_170_residues
MNTEELAIKAKSGDENAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKKLKQEKYFNTWLMRILINNCI
TYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDTLEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKA
LKQLRIELEV
>Mature_170_residues
MNTEELAIKAKSGDENAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKKLKQEKYFNTWLMRILINNCI
TYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDTLEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKA
LKQLRIELEV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=167, Percent_Identity=26.9461077844311, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20330; Mature: 20330

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEELAIKAKSGDENAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKK
CCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHH
LKQEKYFNTWLMRILINNCITYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDT
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHH
LEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKALKQLRIELEV
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTEELAIKAKSGDENAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKK
CCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHH
LKQEKYFNTWLMRILINNCITYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDT
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHH
LEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKALKQLRIELEV
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]