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The map label for this gene is yecS [H]

Identifier: 170756000

GI number: 170756000

Start: 1579547

End: 1580206

Strand: Direct

Name: yecS [H]

Synonym: CLD_3125

Alternate gene names: 170756000

Gene position: 1579547-1580206 (Clockwise)

Preceding gene: 170757033

Following gene: 170756606

Centisome position: 39.91

GC content: 29.24

Gene sequence:

>660_bases
ATGGAACTTAATTTTGATATTATTTTTAGAAATTTACCATTCTTATTAAAGGCTACGTTAGTAACTATAAAAATAACTTT
ACTTTCTTTTATTGTGGCTATAACATTAGCTTTTATTGTTGGGATTTTAAGAACTTATAAATTTTCTAAAATACTAGACC
TTATATTAAATGCATATGTAGAGATTTTTAGAGGATCTCCACTGCTTATACAATTATTTTTTATATATTATGGATTGCCT
AGTGTTGGAATAGCTATGGATGCAGAAGTAGCTGCTGTTATAGGATTAGCATTGAATGGGGCTGCGTATATGTCAGAAAT
TATAAGAGCAGCTATAATTTCTATAGATAGAGGACAGGAAGAGGCTGGTTTTTCTTTGGGATATACAAGATTACAAAATT
TATGCTATATAATATTACCTCAAGCTGCCCAAATATCTGTACCTCCATTAGTAAATGGTTTTTCATCACTTTTGAAAGAT
ACATCTTTGATATCCGTTATTTCTATAACGGAACTGACAAGAAGTGGAAATCTTATATACTCAAGAACAGCTAGACCCTT
TGAAGTATATTTAACTTTGGGACTATTTTATTTTGTGTTAACTTATATAGTTTCCATATGCTCAAAATTTATAGAAAAGA
GAAATGAGAAGTGGAATTAG

Upstream 100 bases:

>100_bases
GATCACTTAACAAAAGAGTTAAATAAAGCGCTAAAAAAAGTAAAAGAAGATGGTAAATATGAAGAGATTAAAAATAAGTG
GTTAAGTTTAGAGAAATAAT

Downstream 100 bases:

>100_bases
ATAAATAGGTAGGTTTATTTGTTTACAAAATTTTAATTAAATATTTATTATGTATTTGATTATTTCGCAGCTAAAAGCTG
CTTTTTCTTTTGTAATTTTA

Product: His/Glu/Gln/Arg/opine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAFIVGILRTYKFSKILDLILNAYVEIFRGSPLLIQLFFIYYGLP
SVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQEEAGFSLGYTRLQNLCYIILPQAAQISVPPLVNGFSSLLKD
TSLISVISITELTRSGNLIYSRTARPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN

Sequences:

>Translated_219_residues
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAFIVGILRTYKFSKILDLILNAYVEIFRGSPLLIQLFFIYYGLP
SVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQEEAGFSLGYTRLQNLCYIILPQAAQISVPPLVNGFSSLLKD
TSLISVISITELTRSGNLIYSRTARPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN
>Mature_219_residues
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAFIVGILRTYKFSKILDLILNAYVEIFRGSPLLIQLFFIYYGLP
SVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQEEAGFSLGYTRLQNLCYIILPQAAQISVPPLVNGFSSLLKD
TSLISVISITELTRSGNLIYSRTARPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=220, Percent_Identity=41.8181818181818, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787030, Length=216, Percent_Identity=32.8703703703704, Blast_Score=138, Evalue=2e-34,
Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=32.4324324324324, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786874, Length=235, Percent_Identity=26.3829787234043, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=31.3364055299539, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788646, Length=211, Percent_Identity=27.9620853080569, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787087, Length=224, Percent_Identity=29.0178571428571, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082239, Length=176, Percent_Identity=33.5227272727273, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788645, Length=204, Percent_Identity=27.4509803921569, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI48994930, Length=205, Percent_Identity=26.3414634146341, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24499; Mature: 24499

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAFIVGILRTYKFSKILDLILNAYV
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIFRGSPLLIQLFFIYYGLPSVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQE
HHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
EAGFSLGYTRLQNLCYIILPQAAQISVPPLVNGFSSLLKDTSLISVISITELTRSGNLIY
CCCCHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SRTARPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAFIVGILRTYKFSKILDLILNAYV
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIFRGSPLLIQLFFIYYGLPSVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQE
HHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
EAGFSLGYTRLQNLCYIILPQAAQISVPPLVNGFSSLLKDTSLISVISITELTRSGNLIY
CCCCHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SRTARPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]