| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is pgcA [H]
Identifier: 170755958
GI number: 170755958
Start: 3370172
End: 3371899
Strand: Reverse
Name: pgcA [H]
Synonym: CLD_1425
Alternate gene names: 170755958
Gene position: 3371899-3370172 (Counterclockwise)
Preceding gene: 170757176
Following gene: 170755556
Centisome position: 85.19
GC content: 25.64
Gene sequence:
>1728_bases ATGAACTATAAATATGCTTACAATTCATGGATGAATTCTTGTTTTTTAGAAAAAAGAGAAAAAGAACAATTAAAAAACAT AGATGATGAACAAGAGATAAAAGACAGATTCTATAAAGATTTAAGCTTTGGAACAGGTGGAATAAGAGGGGTAGCTGGTT TAGGTACAAATAGAATAAATAAATATACTATAGCTAAAGCTACGGAAGGGTTATCAAATTATCTAATTCATAATTTTAAA GAAAAAGGTATATCTGTTGCAATAGCCTATGATTGTAGAAATGATTCTTTAGATTTCGCTAAAAAAGCTAGTGAAGTATT ATGCTCATATGGTATAAGAGTATATATATTTAGTGATATAATGTGCACACCTATACTATCCTATGCTGTTAGAGAACTAA AATGTAAAGCTGGAATAGTTATAACTGCATCACATAATAGTAAAGAGTATAATGGGTACAAAGTATATAATCATAATGGA AATCAAATAACAGATAAAGAAGCACAAGAGATAGCTGAGTATATAAAAGAAGTAGAGGACTTAGGTTGTATAAAGTATAT GGATATAAATGATGCAAAGGAAAAAAATTTATACGAATTTGTACCAATAGAGATATTAAATAAATATTTTTATAATGTAA AAAATTTAACTTTAAGAAAAGATATTGTAAAAAATTATGAAAAGAATTTTAAAATATTATATACACCACTACATGGAACT GGAAATGTTCCAGTAAGAAGAGCCTTATGTGAAATTGGATATAATAATGTTTTTGTAGTTAAGGATCAAGAAAAACCCAA TGGAAATTTCCCAACAGTAAAATATCCTAATCCAGAGGATAATAAAGCTTTCTATGCTTCTTTAAAAGAGGCAGAAAATA TAAATCCTGATGTAATAATAGCTACCGATCCTGATTGTGATAGAGTAGGGATTATGGTTAGGGATCATAGTACAAGATAT GTAGCTTTAAATGGAAATGAATTAGGTGTAATTCTTACTAATTATATATTAAGTTCCTTAGAAGAAGAAAAAAAAATACC TGAAAATTCAGTGCTTTTAAAAACCATAGTAACTACAGATATGGTTAAAAGTATATGTAAAGACTATGGAGTTAAGGTAG AAGAAGTTTTAACAGGTTTTAAATATATAGGAGAGAAAATAGAAGAATTTAAGAAAAATGGGCAAAATAAATTTATATTT GGGTTTGAGGAAAGCTATGGATATTTATTTGGGGACTTTGTTAGAGAGAAAGATGGAATAATAAGCTCTGTGTTAATATG TGAAATGGCTTTATATTATAAGATTCAAAATAAAAATTTATTTGATGTTTTAACAGAGCTTTATGATAAATATGGATATT ATAAAGAAAAATTAATATCCATGGAGTTTAAAGGAGAAGAGGGCAAAAATAAAATAGAAAATATAATCAATAATTTAAGA ATTCATGATTCTAAAACTATATTTAATGAAGAAATACTAATAAAAGAAGATTATAAAACAGGTTTAAAAATAAATATGAA TAAAAAGAAAGAATATATTAATAAGCTTCCTAAATCTAATGTTTTAAAATTCCATTTAAATAACGGTACTAATTTTGTAA TTAGACCATCTGGAACAGAACCTAAAATAAAAATATATTTATCATCAGTACACACAACAGCTGAAGGGGCTGAAATGAAG ATAAATAAGCTAGAAAAAAATATAAAGAATATGATAAATAAATTTTAA
Upstream 100 bases:
>100_bases TATAGATTTTATAAAATAAAATGGGGTGAAATTTTATTTAGAGTACAATTATTTATGTTTTTTAATATAATGTAGTATGA AATTTTATTGGAGGTAGTAA
Downstream 100 bases:
>100_bases AACTACAAATATTTAAATTATGCATAGGATAATTTAAAAAATTATCCTATGCATAATTTAAATATTTTTGTATTTTCATT GTTTAATCATTTATATTATT
Product: phosphoglucomutase/phosphomannomutase family protein
Products: NA
Alternate protein names: PGM; Alpha-phosphoglucomutase; Glucose phosphomutase [H]
Number of amino acids: Translated: 575; Mature: 575
Protein sequence:
>575_residues MNYKYAYNSWMNSCFLEKREKEQLKNIDDEQEIKDRFYKDLSFGTGGIRGVAGLGTNRINKYTIAKATEGLSNYLIHNFK EKGISVAIAYDCRNDSLDFAKKASEVLCSYGIRVYIFSDIMCTPILSYAVRELKCKAGIVITASHNSKEYNGYKVYNHNG NQITDKEAQEIAEYIKEVEDLGCIKYMDINDAKEKNLYEFVPIEILNKYFYNVKNLTLRKDIVKNYEKNFKILYTPLHGT GNVPVRRALCEIGYNNVFVVKDQEKPNGNFPTVKYPNPEDNKAFYASLKEAENINPDVIIATDPDCDRVGIMVRDHSTRY VALNGNELGVILTNYILSSLEEEKKIPENSVLLKTIVTTDMVKSICKDYGVKVEEVLTGFKYIGEKIEEFKKNGQNKFIF GFEESYGYLFGDFVREKDGIISSVLICEMALYYKIQNKNLFDVLTELYDKYGYYKEKLISMEFKGEEGKNKIENIINNLR IHDSKTIFNEEILIKEDYKTGLKINMNKKKEYINKLPKSNVLKFHLNNGTNFVIRPSGTEPKIKIYLSSVHTTAEGAEMK INKLEKNIKNMINKF
Sequences:
>Translated_575_residues MNYKYAYNSWMNSCFLEKREKEQLKNIDDEQEIKDRFYKDLSFGTGGIRGVAGLGTNRINKYTIAKATEGLSNYLIHNFK EKGISVAIAYDCRNDSLDFAKKASEVLCSYGIRVYIFSDIMCTPILSYAVRELKCKAGIVITASHNSKEYNGYKVYNHNG NQITDKEAQEIAEYIKEVEDLGCIKYMDINDAKEKNLYEFVPIEILNKYFYNVKNLTLRKDIVKNYEKNFKILYTPLHGT GNVPVRRALCEIGYNNVFVVKDQEKPNGNFPTVKYPNPEDNKAFYASLKEAENINPDVIIATDPDCDRVGIMVRDHSTRY VALNGNELGVILTNYILSSLEEEKKIPENSVLLKTIVTTDMVKSICKDYGVKVEEVLTGFKYIGEKIEEFKKNGQNKFIF GFEESYGYLFGDFVREKDGIISSVLICEMALYYKIQNKNLFDVLTELYDKYGYYKEKLISMEFKGEEGKNKIENIINNLR IHDSKTIFNEEILIKEDYKTGLKINMNKKKEYINKLPKSNVLKFHLNNGTNFVIRPSGTEPKIKIYLSSVHTTAEGAEMK INKLEKNIKNMINKF >Mature_575_residues MNYKYAYNSWMNSCFLEKREKEQLKNIDDEQEIKDRFYKDLSFGTGGIRGVAGLGTNRINKYTIAKATEGLSNYLIHNFK EKGISVAIAYDCRNDSLDFAKKASEVLCSYGIRVYIFSDIMCTPILSYAVRELKCKAGIVITASHNSKEYNGYKVYNHNG NQITDKEAQEIAEYIKEVEDLGCIKYMDINDAKEKNLYEFVPIEILNKYFYNVKNLTLRKDIVKNYEKNFKILYTPLHGT GNVPVRRALCEIGYNNVFVVKDQEKPNGNFPTVKYPNPEDNKAFYASLKEAENINPDVIIATDPDCDRVGIMVRDHSTRY VALNGNELGVILTNYILSSLEEEKKIPENSVLLKTIVTTDMVKSICKDYGVKVEEVLTGFKYIGEKIEEFKKNGQNKFIF GFEESYGYLFGDFVREKDGIISSVLICEMALYYKIQNKNLFDVLTELYDKYGYYKEKLISMEFKGEEGKNKIENIINNLR IHDSKTIFNEEILIKEDYKTGLKINMNKKKEYINKLPKSNVLKFHLNNGTNFVIRPSGTEPKIKIYLSSVHTTAEGAEMK INKLEKNIKNMINKF
Specific function: Catalyzes the interconversion between glucose-6- phosphate and alpha-glucose-1-phosphate. This is the first step in the biosynthesis of diglucosyl-diacylglycerol (Glc2-DAG), i.e. the predominant glycolipid found in B.subtilis membrane, which is also used
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI63055049, Length=542, Percent_Identity=32.6568265682657, Blast_Score=277, Evalue=2e-74, Organism=Homo sapiens, GI31377548, Length=584, Percent_Identity=32.7054794520548, Blast_Score=276, Evalue=3e-74, Organism=Caenorhabditis elegans, GI71993870, Length=554, Percent_Identity=31.9494584837545, Blast_Score=270, Evalue=2e-72, Organism=Caenorhabditis elegans, GI71993878, Length=311, Percent_Identity=34.4051446945338, Blast_Score=177, Evalue=1e-44, Organism=Saccharomyces cerevisiae, GI6323934, Length=582, Percent_Identity=29.553264604811, Blast_Score=236, Evalue=1e-62, Organism=Drosophila melanogaster, GI20129809, Length=563, Percent_Identity=28.7744227353464, Blast_Score=234, Evalue=1e-61, Organism=Drosophila melanogaster, GI24653722, Length=535, Percent_Identity=28.2242990654206, Blast_Score=226, Evalue=3e-59, Organism=Drosophila melanogaster, GI24651977, Length=519, Percent_Identity=28.131021194605, Blast_Score=216, Evalue=4e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 66325; Mature: 66325
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYKYAYNSWMNSCFLEKREKEQLKNIDDEQEIKDRFYKDLSFGTGGIRGVAGLGTNRIN CCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCC KYTIAKATEGLSNYLIHNFKEKGISVAIAYDCRNDSLDFAKKASEVLCSYGIRVYIFSDI EEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEHHH MCTPILSYAVRELKCKAGIVITASHNSKEYNGYKVYNHNGNQITDKEAQEIAEYIKEVED HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH LGCIKYMDINDAKEKNLYEFVPIEILNKYFYNVKNLTLRKDIVKNYEKNFKILYTPLHGT CCCEEEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCC GNVPVRRALCEIGYNNVFVVKDQEKPNGNFPTVKYPNPEDNKAFYASLKEAENINPDVII CCCHHHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEE ATDPDCDRVGIMVRDHSTRYVALNGNELGVILTNYILSSLEEEKKIPENSVLLKTIVTTD EECCCCCEEEEEEEECCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH MVKSICKDYGVKVEEVLTGFKYIGEKIEEFKKNGQNKFIFGFEESYGYLFGDFVREKDGI HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCH ISSVLICEMALYYKIQNKNLFDVLTELYDKYGYYKEKLISMEFKGEEGKNKIENIINNLR HHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCHHHHHHEEEEECCCCCHHHHHHHHHHCE IHDSKTIFNEEILIKEDYKTGLKINMNKKKEYINKLPKSNVLKFHLNNGTNFVIRPSGTE ECCCCEEECCEEEEEECCCCCCEEECCHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCC PKIKIYLSSVHTTAEGAEMKINKLEKNIKNMINKF CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNYKYAYNSWMNSCFLEKREKEQLKNIDDEQEIKDRFYKDLSFGTGGIRGVAGLGTNRIN CCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCC KYTIAKATEGLSNYLIHNFKEKGISVAIAYDCRNDSLDFAKKASEVLCSYGIRVYIFSDI EEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEHHH MCTPILSYAVRELKCKAGIVITASHNSKEYNGYKVYNHNGNQITDKEAQEIAEYIKEVED HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH LGCIKYMDINDAKEKNLYEFVPIEILNKYFYNVKNLTLRKDIVKNYEKNFKILYTPLHGT CCCEEEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCC GNVPVRRALCEIGYNNVFVVKDQEKPNGNFPTVKYPNPEDNKAFYASLKEAENINPDVII CCCHHHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEE ATDPDCDRVGIMVRDHSTRYVALNGNELGVILTNYILSSLEEEKKIPENSVLLKTIVTTD EECCCCCEEEEEEEECCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH MVKSICKDYGVKVEEVLTGFKYIGEKIEEFKKNGQNKFIFGFEESYGYLFGDFVREKDGI HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCH ISSVLICEMALYYKIQNKNLFDVLTELYDKYGYYKEKLISMEFKGEEGKNKIENIINNLR HHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCHHHHHHEEEEECCCCCHHHHHHHHHHCE IHDSKTIFNEEILIKEDYKTGLKINMNKKKEYINKLPKSNVLKFHLNNGTNFVIRPSGTE ECCCCEEECCEEEEEECCCCCCEEECCHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCC PKIKIYLSSVHTTAEGAEMKINKLEKNIKNMINKF CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 2127799 [H]