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The map label for this gene is lrpC [H]

Identifier: 170755792

GI number: 170755792

Start: 953551

End: 954000

Strand: Direct

Name: lrpC [H]

Synonym: CLD_3729

Alternate gene names: 170755792

Gene position: 953551-954000 (Clockwise)

Preceding gene: 170757792

Following gene: 170754734

Centisome position: 24.09

GC content: 25.33

Gene sequence:

>450_bases
ATGAAATTAGATGAAATAGATGTATTAATTTTGCAAGAGTTACAAAAAGATAGTAGGCTATCTATAAGAGAATTATCTAA
ACGTATAAATCTTTCACCACCATCTGTTACTGAAAGAGTAAGAAGACTGGAAGATGATGGGGTTATTGAAAGGTATACAA
TTAAAATAAATAAAAAGAAACTTGGATTGTCTATTGATTGTATAATCAAGGTAACTATGAAAAATGGACAGTATGAAAAA
TTCAAGATATTCATTAAGGAGTATAAAAGAAGTGAATGGTGTTATAGAATTGCTGGTGATGGATGCTTTTTAGTTAAATT
ATTAGTTAAATCTTTAAATGATATAGAAGAATTTATAAATGATATATCTTCATATGCAATAACAGAAACTATTATAGCAT
TTTCGGAAGTAACAATAAATAATAGCATTAATAAATTCTTAGAAGAATAA

Upstream 100 bases:

>100_bases
ATATTATACAAATTATAATATTAATATTGTATTGTAATTGATATATAATATAATAATAAACATATCATTTGAAATAATAA
TTTGATAGGGGAAGTTACAA

Downstream 100 bases:

>100_bases
AAATATGACATAAGACAAGATTATATATTTAAGTGCACAATAAAATATAAGGAGTAACTTAATTGTTCTATATTTAGTAA
AAAATTAATACATAATATTA

Product: HTH-type transcriptional regulator LrpC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKLDEIDVLILQELQKDSRLSIRELSKRINLSPPSVTERVRRLEDDGVIERYTIKINKKKLGLSIDCIIKVTMKNGQYEK
FKIFIKEYKRSEWCYRIAGDGCFLVKLLVKSLNDIEEFINDISSYAITETIIAFSEVTINNSINKFLEE

Sequences:

>Translated_149_residues
MKLDEIDVLILQELQKDSRLSIRELSKRINLSPPSVTERVRRLEDDGVIERYTIKINKKKLGLSIDCIIKVTMKNGQYEK
FKIFIKEYKRSEWCYRIAGDGCFLVKLLVKSLNDIEEFINDISSYAITETIIAFSEVTINNSINKFLEE
>Mature_149_residues
MKLDEIDVLILQELQKDSRLSIRELSKRINLSPPSVTERVRRLEDDGVIERYTIKINKKKLGLSIDCIIKVTMKNGQYEK
FKIFIKEYKRSEWCYRIAGDGCFLVKLLVKSLNDIEEFINDISSYAITETIIAFSEVTINNSINKFLEE

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=142, Percent_Identity=34.5070422535211, Blast_Score=83, Evalue=7e-18,
Organism=Escherichia coli, GI87081742, Length=148, Percent_Identity=24.3243243243243, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17413; Mature: 17413

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDEIDVLILQELQKDSRLSIRELSKRINLSPPSVTERVRRLEDDGVIERYTIKINKKK
CCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEEEECHH
LGLSIDCIIKVTMKNGQYEKFKIFIKEYKRSEWCYRIAGDGCFLVKLLVKSLNDIEEFIN
HCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
DISSYAITETIIAFSEVTINNSINKFLEE
HHHHHHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MKLDEIDVLILQELQKDSRLSIRELSKRINLSPPSVTERVRRLEDDGVIERYTIKINKKK
CCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEEEECHH
LGLSIDCIIKVTMKNGQYEKFKIFIKEYKRSEWCYRIAGDGCFLVKLLVKSLNDIEEFIN
HCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
DISSYAITETIIAFSEVTINNSINKFLEE
HHHHHHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]