| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755779
Identifier: 170755779
GI number: 170755779
Start: 1232568
End: 1233545
Strand: Direct
Name: 170755779
Synonym: CLD_3455
Alternate gene names: NA
Gene position: 1232568-1233545 (Clockwise)
Preceding gene: 170755837
Following gene: 170756755
Centisome position: 31.14
GC content: 21.78
Gene sequence:
>978_bases ATGAGCAAACCTATTATACATACATATATAAGTAGATTTGAAAATAAAGAAAAAATATTTAAATATAATTTAGATCTATA TCAATGTAAAAATATAAGTAAATTATATTACTACACTAGCATAAGTACTTTAGAAAATATAATAAGTAAGGAAAATATTT GGCTATCTAATAGTAAGTATCTTAATGATAGTACAGAAATAAATTATACCAACAATTTGATTTATGATATATGTGAAGAA TATTTGAATAGAAATGAAGAATTTGATAAATTTTTCAAAGAAAATATAGAGATTTTGCTGCATACTATAGATATGGAATT AGGGGATACTTACATATTATCTCTTACTGAAAATAAAGATTCATTGGCTCTTTGGTCTAATTATTCTAATTATGATGGAT ATAATTTAGCATTTAATTGTGATTATTTTCAGAATATATTTACAGAAGAAAATTATAGGTTTATAGATAAAAATAAAAAT TCTATTTTCTTAAATGAGGGGGAAGATTTTGTATGGTATTTTGGAGAGGTTATATATAACAAGGAACATCAGGAAAATAT AATAAAGGAAAGAGTAGAATTTTTATATAATTTATATAAAAATTTTTATGAATTTAAAGAGGATGATGATTTTAAATCTT TAATAGTGTATGTGCTCTATAATATAGCTTATATAGCTACTTTTTTTAAAGATGAGAGTTTTAAAGAGGAACAAGAACAT AGGTTAGTGTTTAGAGTTATTAATAAAAATATAAAAAAGCAAATAGTAAAACATAGAATTTCAAATAGAGTTTTTATTCC TTATATAGAATTAGGTCTTAATCAAAATACAAAAGAAGGTAATTTACCTGTAGAGAAGATAACTATAGGTCCTAAAAATA ATTTAGATATTGCAGAAATGGGCTTGAGATCTTTTTTAGAAAGTGAAGGATATTATAAAATAACTATAAAAAAATCTAAG ATACCTTTAAGATATTAA
Upstream 100 bases:
>100_bases AATGTAAATAAAATATTTTCTAAAGGATAAGAATAATAAGTAAAAGCTATGATAGAAATCATAGCTTTTATAAATTTACG TTAAATGAGGTATTGATATT
Downstream 100 bases:
>100_bases AATTTATAAAGATGTAAGTAAGTATAAGTTAGAAATGGGAATATAATAAGTGTAGAATTATAAGTTTGAAGTTGTAGATG GAAGATTGTAGTTGATAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MSKPIIHTYISRFENKEKIFKYNLDLYQCKNISKLYYYTSISTLENIISKENIWLSNSKYLNDSTEINYTNNLIYDICEE YLNRNEEFDKFFKENIEILLHTIDMELGDTYILSLTENKDSLALWSNYSNYDGYNLAFNCDYFQNIFTEENYRFIDKNKN SIFLNEGEDFVWYFGEVIYNKEHQENIIKERVEFLYNLYKNFYEFKEDDDFKSLIVYVLYNIAYIATFFKDESFKEEQEH RLVFRVINKNIKKQIVKHRISNRVFIPYIELGLNQNTKEGNLPVEKITIGPKNNLDIAEMGLRSFLESEGYYKITIKKSK IPLRY
Sequences:
>Translated_325_residues MSKPIIHTYISRFENKEKIFKYNLDLYQCKNISKLYYYTSISTLENIISKENIWLSNSKYLNDSTEINYTNNLIYDICEE YLNRNEEFDKFFKENIEILLHTIDMELGDTYILSLTENKDSLALWSNYSNYDGYNLAFNCDYFQNIFTEENYRFIDKNKN SIFLNEGEDFVWYFGEVIYNKEHQENIIKERVEFLYNLYKNFYEFKEDDDFKSLIVYVLYNIAYIATFFKDESFKEEQEH RLVFRVINKNIKKQIVKHRISNRVFIPYIELGLNQNTKEGNLPVEKITIGPKNNLDIAEMGLRSFLESEGYYKITIKKSK IPLRY >Mature_324_residues SKPIIHTYISRFENKEKIFKYNLDLYQCKNISKLYYYTSISTLENIISKENIWLSNSKYLNDSTEINYTNNLIYDICEEY LNRNEEFDKFFKENIEILLHTIDMELGDTYILSLTENKDSLALWSNYSNYDGYNLAFNCDYFQNIFTEENYRFIDKNKNS IFLNEGEDFVWYFGEVIYNKEHQENIIKERVEFLYNLYKNFYEFKEDDDFKSLIVYVLYNIAYIATFFKDESFKEEQEHR LVFRVINKNIKKQIVKHRISNRVFIPYIELGLNQNTKEGNLPVEKITIGPKNNLDIAEMGLRSFLESEGYYKITIKKSKI PLRY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39286; Mature: 39155
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPIIHTYISRFENKEKIFKYNLDLYQCKNISKLYYYTSISTLENIISKENIWLSNSKY CCCCHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEEEEEEHHHHHHHHHHCCEEECCCCC LNDSTEINYTNNLIYDICEEYLNRNEEFDKFFKENIEILLHTIDMELGDTYILSLTENKD CCCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCCCEEEEEEECCCC SLALWSNYSNYDGYNLAFNCDYFQNIFTEENYRFIDKNKNSIFLNEGEDFVWYFGEVIYN CEEEECCCCCCCCEEEEEECHHHHHHHCCCCEEEEECCCCEEEEECCCCEEEEEHHHHHC KEHQENIIKERVEFLYNLYKNFYEFKEDDDFKSLIVYVLYNIAYIATFFKDESFKEEQEH CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH RLVFRVINKNIKKQIVKHRISNRVFIPYIELGLNQNTKEGNLPVEKITIGPKNNLDIAEM HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHH GLRSFLESEGYYKITIKKSKIPLRY HHHHHHHCCCEEEEEEEECCCCCCC >Mature Secondary Structure SKPIIHTYISRFENKEKIFKYNLDLYQCKNISKLYYYTSISTLENIISKENIWLSNSKY CCCHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEEEEEEHHHHHHHHHHCCEEECCCCC LNDSTEINYTNNLIYDICEEYLNRNEEFDKFFKENIEILLHTIDMELGDTYILSLTENKD CCCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCCCEEEEEEECCCC SLALWSNYSNYDGYNLAFNCDYFQNIFTEENYRFIDKNKNSIFLNEGEDFVWYFGEVIYN CEEEECCCCCCCCEEEEEECHHHHHHHCCCCEEEEECCCCEEEEECCCCEEEEEHHHHHC KEHQENIIKERVEFLYNLYKNFYEFKEDDDFKSLIVYVLYNIAYIATFFKDESFKEEQEH CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH RLVFRVINKNIKKQIVKHRISNRVFIPYIELGLNQNTKEGNLPVEKITIGPKNNLDIAEM HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHH GLRSFLESEGYYKITIKKSKIPLRY HHHHHHHCCCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA