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The map label for this gene is yvmB [H]

Identifier: 170755633

GI number: 170755633

Start: 1128228

End: 1128752

Strand: Direct

Name: yvmB [H]

Synonym: CLD_3550

Alternate gene names: 170755633

Gene position: 1128228-1128752 (Clockwise)

Preceding gene: 170756468

Following gene: 170754803

Centisome position: 28.5

GC content: 22.86

Gene sequence:

>525_bases
ATGATAATAGAAGAGCAGGATAACAAATCAGTAAAATTATTTGAAAAAGTTATTTCTTTTATAAACCATTTAAGTGAAAT
AGACAAAAATCAAGAGAAAAATTTAATTGAATCAATTTTAAATATAAAAGAAGATAAAGAATGGGGAGATAAGGAGTTTA
ACAAAATAACAGATAATGATATAAAGGGGATATCTTTATCTGAGTTCCACGTTATAGAATGTATAGGTAAAAATAATATG
TCTAATAATATATTCATAGCAAAAGAGCTTAATATGACTAAAGGTGGTATATCAAAAATAAATTCAAAACTTCTTTCAAA
AGATATTATTAAAGCAGATAAGATTGAAAATGATAAAAGAGAAATTTATTATAGCTTAACAGAAAAAGGTATAGCCTTGT
TTAAATTACATGAGCATCTTCATGAAAAAGAACGAGAAAAGCTAATGAAAATTTTAAGTAACTATAAACTAGAAGAAATA
ACTACTATTTTAAAATTTTTAGAGGATTTAGAGAAAGTTATATAA

Upstream 100 bases:

>100_bases
AAATAGTTTCCTTGTAAACTATTTAGATATAATTGAATAAAAATTTTTTTCAATTATAATATATATTAGCAACCAAGAAA
CTAAAAGAGGAGCGTACTTT

Downstream 100 bases:

>100_bases
TCTAAATTATTTATCTAAATAAGGAATGTTTGTTGTTGATAGATTTTAAAAAGTACAATAAAAAATATAAGTAAAATGTA
CAAGAGTATACTTATAAATA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MIIEEQDNKSVKLFEKVISFINHLSEIDKNQEKNLIESILNIKEDKEWGDKEFNKITDNDIKGISLSEFHVIECIGKNNM
SNNIFIAKELNMTKGGISKINSKLLSKDIIKADKIENDKREIYYSLTEKGIALFKLHEHLHEKEREKLMKILSNYKLEEI
TTILKFLEDLEKVI

Sequences:

>Translated_174_residues
MIIEEQDNKSVKLFEKVISFINHLSEIDKNQEKNLIESILNIKEDKEWGDKEFNKITDNDIKGISLSEFHVIECIGKNNM
SNNIFIAKELNMTKGGISKINSKLLSKDIIKADKIENDKREIYYSLTEKGIALFKLHEHLHEKEREKLMKILSNYKLEEI
TTILKFLEDLEKVI
>Mature_174_residues
MIIEEQDNKSVKLFEKVISFINHLSEIDKNQEKNLIESILNIKEDKEWGDKEFNKITDNDIKGISLSEFHVIECIGKNNM
SNNIFIAKELNMTKGGISKINSKLLSKDIIKADKIENDKREIYYSLTEKGIALFKLHEHLHEKEREKLMKILSNYKLEEI
TTILKFLEDLEKVI

Specific function: Involved in protein secretion [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 20381; Mature: 20381

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIEEQDNKSVKLFEKVISFINHLSEIDKNQEKNLIESILNIKEDKEWGDKEFNKITDND
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
IKGISLSEFHVIECIGKNNMSNNIFIAKELNMTKGGISKINSKLLSKDIIKADKIENDKR
CCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
EIYYSLTEKGIALFKLHEHLHEKEREKLMKILSNYKLEEITTILKFLEDLEKVI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIIEEQDNKSVKLFEKVISFINHLSEIDKNQEKNLIESILNIKEDKEWGDKEFNKITDND
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
IKGISLSEFHVIECIGKNNMSNNIFIAKELNMTKGGISKINSKLLSKDIIKADKIENDKR
CCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
EIYYSLTEKGIALFKLHEHLHEKEREKLMKILSNYKLEEITTILKFLEDLEKVI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]