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The map label for this gene is degT [H]

Identifier: 170755620

GI number: 170755620

Start: 945160

End: 946281

Strand: Direct

Name: degT [H]

Synonym: CLD_3738

Alternate gene names: 170755620

Gene position: 945160-946281 (Clockwise)

Preceding gene: 170754819

Following gene: 170754944

Centisome position: 23.88

GC content: 29.68

Gene sequence:

>1122_bases
GTGAAGGTTAACTTTTATACATCTAAAAGAGAATATTTAGAAAAAAAAGCTGAATTTGATAAGGCTATATTTGATGTAGT
AGAAAGTGGAAGTTTTATACTTGGACCACAAGTTAAAAACTTTGAAGAAGCTATAAAAGAATATACAGGAGCAAAACATG
CTATAGGCGTAGCATCAGGTACAGATGCTTTAGTAATTGCCTCTCATATTTTAGGTTTTGAAAATGGAGCTGAAGTTATA
ACTTCACCATTTACATTCTTAGCATCCACATCTTGTATAGCTAAACATAGAGCTACACCTGTATTTGTAGATATAGACGA
AGAAACTTTTGAAATGGATTTAAATCAAATAGAATCAAAAATAAATTCAAAAACAAAGGGAATACTTCCAATTCATTTAT
TCTCACAAATGAACAATATGGATAAAATAATGGAAATAGCAAATAAAAATGACTTAAGAGTTTTAGAAGACGCAGCAGAA
GCCTTTGGAATGAGATGGAAAGGTAAAGGAGACAGCTATAGACATTCAGGAACTATAGGAGATATGGGTATATTTTCATT
CTTCCCAACTAAAACATTAGGTGGATATGGTGACGGAGGTATGATAGTTACTAATAGTGATGAATTAGCAGAAAGAACTA
GAATGTTTAGAGTACATGGAGCATCTAAAAAATATCACTATGATTATATAGGATATAATTCAAGATTAGATAGTATGCAA
GCTGCAGTACTTTCAGTAAAATTAAAATATATAAATGATGCTATTAAAAAGAGAGAAGAAATAGCTAATATGTACATGGA
AAAATTACAGGATTGTGAATATATAAGATTCCCTAAAATAAAAGGAGATCAAAAACCAGTATACTATGTATTCAATATAC
GTGCTGAAAGAAGAGATGAACTGGTAGCTTACTTAAAAGAAAATGAAATAGGAAATAGTATTTATTATCCAATACCATTA
CACATGCAAAAATGTTTCAGCTACTTAGGACATAAAGAAGGAGACTTCCCAGTAGCAGAAAAAGTATCAAAAGAAATATT
AGCATTACCAATATATCCAGAATTAAAAGAAGAAGAAGTAGATTTTGTTTGTGAAACAATAAAGAAATTCTACACAAAAT
AA

Upstream 100 bases:

>100_bases
GGATGTTAATAAAAATAAATAAGATTTGTAATAAAATAAGCAAATCTAAAATAGAAAATTTTGATTATTAAATAAAAATA
AAAAAGAAAGAGTGATATAA

Downstream 100 bases:

>100_bases
AATTTAAAATGGAGTTATGTTACCCTTGGTTTAAAAAAGGGATATGTGGCGAGATCGGCAACTCACTTCAATAAGAGATT
CTAATTTATTTTTTCTTAAA

Product: putative pleiotropic regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASGTDALVIASHILGFENGAEVI
TSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESKINSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAE
AFGMRWKGKGDSYRHSGTIGDMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDELVAYLKENEIGNSIYYPIPL
HMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEVDFVCETIKKFYTK

Sequences:

>Translated_373_residues
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASGTDALVIASHILGFENGAEVI
TSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESKINSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAE
AFGMRWKGKGDSYRHSGTIGDMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDELVAYLKENEIGNSIYYPIPL
HMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEVDFVCETIKKFYTK
>Mature_373_residues
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASGTDALVIASHILGFENGAEVI
TSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESKINSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAE
AFGMRWKGKGDSYRHSGTIGDMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDELVAYLKENEIGNSIYYPIPL
HMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEVDFVCETIKKFYTK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=376, Percent_Identity=29.5212765957447, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI2367285, Length=353, Percent_Identity=28.328611898017, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42554; Mature: 42554

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASG
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCC
TDALVIASHILGFENGAEVITSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESK
CCHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
INSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAEAFGMRWKGKGDSYRHSGTIG
HCCCCCCEEEHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCC
DMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
CCHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHH
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECHHHHHH
LVAYLKENEIGNSIYYPIPLHMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEV
HHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCCCHHHH
DFVCETIKKFYTK
HHHHHHHHHHHCC
>Mature Secondary Structure
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASG
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCC
TDALVIASHILGFENGAEVITSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESK
CCHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
INSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAEAFGMRWKGKGDSYRHSGTIG
HCCCCCCEEEHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCC
DMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
CCHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHH
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECHHHHHH
LVAYLKENEIGNSIYYPIPLHMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEV
HHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCCCHHHH
DFVCETIKKFYTK
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]