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The map label for this gene is radC

Identifier: 170755607

GI number: 170755607

Start: 3255194

End: 3255880

Strand: Reverse

Name: radC

Synonym: CLD_1541

Alternate gene names: 170755607

Gene position: 3255880-3255194 (Counterclockwise)

Preceding gene: 170757523

Following gene: 170754793

Centisome position: 82.26

GC content: 26.06

Gene sequence:

>687_bases
ATGGACAATAACTTTAAAATAAAGGATTTACCTAAAAATGAAAGACCGCAGGAAAGACTTATAAGATATGGAGCAGAGGT
TCTTTCAAATTCAGAACTTTTAGCTGTTATTTTAAGGACTGGTACTAAAAATCAAAATATAATGATGCTTGCAAGTAGTT
TAATTAAAGAAACTGGTGGCTTGGATCAACTTTTTAATCAATCTATAGAAGAGTTAACTAAAATTAAAGGAATAGGTGTA
ACAAAAGCAGTTCAAATATTAGCATTATCAGAGCTTTCTAAGAGGTTTAAAACTTATAAATCTGGCAATGAATATAAGAT
AAATACACCTTTAGATGTATCTAATTTAGTTATGGAAGATATGAAGTATTTAAAACAAGAAAAATTAAAAATATTAATTT
TAAATACTAAAAATATAGTTACATATATAAGAGATGTTTTTATAGGAACTCTTAATTCATCTATAGTACATCCAAGAGAA
ATATTCTGTGAAGCTATAAAGAAAAATGGTGCATCCATAATTATATGTCATAATCATCCATCAGGGGATCCAACCCCTAG
CAAAGAAGATATAAATATAACTTTGAGATTAAAAGAATGTGGTAAATTAATAGGAATAGATTTATTAGATCATATAATAA
TTGGTGAAAATAAGTATGTAAGTATGAAAGAAAAAGGTACAATATAA

Upstream 100 bases:

>100_bases
ACATCAATGGATGCTATTATAATGTTGTAGGGCTACCTTTAAATAAATTAAATTCTATGTTAATGGAGATGGGGGTAAAT
CTTTAAAAGGAGTTGTATAA

Downstream 100 bases:

>100_bases
CTAAGGAATAGAGAGGAGTAAAACTTTTATGAGATTGTTTGGTATAACTAAAGATATGGGAATAGATTTAGGTACAGCAA
ATACATTAGTATATATTAAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGLDQLFNQSIEELTKIKGIGV
TKAVQILALSELSKRFKTYKSGNEYKINTPLDVSNLVMEDMKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPRE
IFCEAIKKNGASIIICHNHPSGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI

Sequences:

>Translated_228_residues
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGLDQLFNQSIEELTKIKGIGV
TKAVQILALSELSKRFKTYKSGNEYKINTPLDVSNLVMEDMKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPRE
IFCEAIKKNGASIIICHNHPSGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI
>Mature_228_residues
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGLDQLFNQSIEELTKIKGIGV
TKAVQILALSELSKRFKTYKSGNEYKINTPLDVSNLVMEDMKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPRE
IFCEAIKKNGASIIICHNHPSGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=35.6807511737089, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1788312, Length=107, Percent_Identity=41.1214953271028, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788997, Length=106, Percent_Identity=40.5660377358491, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI2367100, Length=106, Percent_Identity=38.6792452830189, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1541_CLOBK (B1IM02)

Other databases:

- EMBL:   CP000939
- RefSeq:   YP_001782636.1
- ProteinModelPortal:   B1IM02
- SMR:   B1IM02
- GeneID:   6150596
- GenomeReviews:   CP000939_GR
- KEGG:   cbb:CLD_1541
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   CBOT498213:CLD_1541-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25699; Mature: 25699

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGG
CCCCCEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHHHCCC
LDQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKINTPLDVSNLVMED
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHH
MKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPREIFCEAIKKNGASIIICHNHP
HHHHHHCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCC
SGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI
CCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHCCCCCEEECCCCCCC
>Mature Secondary Structure
MDNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGG
CCCCCEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHHHCCC
LDQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKINTPLDVSNLVMED
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHH
MKYLKQEKLKILILNTKNIVTYIRDVFIGTLNSSIVHPREIFCEAIKKNGASIIICHNHP
HHHHHHCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCC
SGDPTPSKEDINITLRLKECGKLIGIDLLDHIIIGENKYVSMKEKGTI
CCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA