Click here to switch to the map view.

The map label for this gene is glcT [H]

Identifier: 170755394

GI number: 170755394

Start: 2925662

End: 2926489

Strand: Reverse

Name: glcT [H]

Synonym: CLD_1819

Alternate gene names: 170755394

Gene position: 2926489-2925662 (Counterclockwise)

Preceding gene: 170756717

Following gene: 170756387

Centisome position: 73.93

GC content: 27.9

Gene sequence:

>828_bases
TTGGAGAACTATACAGTAAAAAAGGTTCTTAATAATAATGTAATAATAGCAAATTGGCGAGAAGAGGATGCAATACTAGT
GGGGAAGGGTATAGGATTTAATTCTAAAAAGGGAGAAGTTCTTTCTAAGGATAAAATAGAAAAGGTATATATAAAGACCA
CCTCAAAGATGTCAGAAAATTATAATAAAGTTTTGGATAATATAGATAATAAAATAGTAGGTGTTTCCGAAGAAATAATA
AATTTTTCAGAAAAGGCTTTAAATACAAAATTAAATGAAGGGGTTCACATTTCTTTGCCAGATCATATAAATTTCGCATT
AAGAAGAATAGAAAAGGGAATAAATATAGAAAATCCTTTTTTAGAGGAATTAGGCATAATTTATCCAAAGGAATATGAAA
TAGCTATGAAGGCTCTTAAGATGATAAATGAGAGATTAAAGGTTAACCTTCCAAAGGATGAAGCGGGATTTATATGCCTT
CATATAAGAGCAGGTATCACAAAACAGCAGGTTTCAGAATCCTTAGCTTATACTAAAAAAATAAGTAAAGTAATGGAACT
TATATCTAAACTAAAAGGAAAACCTTTAGATAAAAATTCCCTTTCTTATGTAAGAACTTTGACCCATTTAAATTTTATGA
TAGAAAGAGTTAAAGAAGATAAAACTATAAAAAATGAGTTATTAGATAGTATAAAAGAAGAGATGAAAAGTGAGTTTAGC
ATTGCCATTAAAGTAGCCATGCTTATAGAAAAATTATTTGAAATAAAAATACCAGAGGATGAAATAGGATATATCGCATT
ACATTTAAAAAGGATAGGGCAATATTAA

Upstream 100 bases:

>100_bases
GATTAATAAATTTTATAATTACAACATAGGTGTAGGAGCAGAAAGTTTAATATTATGTTAAATATAAGGTTGGAAAGAAA
AAGGTTTGGAGTGTTAAGAT

Downstream 100 bases:

>100_bases
GGTATATTAAATATATAAACTAAAAAACCTTGCTTTTGCAAGGTTTTTAAACTATAAGCAAGCTTAAAGGTGGTGTGTAA
AATTGAAAAATATTTTAACT

Product: BglG family transcriptional antiterminator

Products: NA

Alternate protein names: RNA-binding antitermination protein GlcT [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MENYTVKKVLNNNVIIANWREEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSENYNKVLDNIDNKIVGVSEEII
NFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPFLEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICL
HIRAGITKQQVSESLAYTKKISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFS
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY

Sequences:

>Translated_275_residues
MENYTVKKVLNNNVIIANWREEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSENYNKVLDNIDNKIVGVSEEII
NFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPFLEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICL
HIRAGITKQQVSESLAYTKKISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFS
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY
>Mature_275_residues
MENYTVKKVLNNNVIIANWREEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSENYNKVLDNIDNKIVGVSEEII
NFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPFLEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICL
HIRAGITKQQVSESLAYTKKISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFS
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY

Specific function: Mediates the positive regulation of the glucose PTS operon (ptsGHI) by functioning as an antiterminator factor of transcription via its interaction with the RNA-antiterminator (RAT) sequence located upstream of the ptsG gene. The RNA-binding domain of Glc

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=274, Percent_Identity=29.5620437956204, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 31568; Mature: 31568

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENYTVKKVLNNNVIIANWREEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSEN
CCCCCHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCHHCHHEEEEEHHHHHHHH
YNKVLDNIDNKIVGVSEEIINFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPF
HHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCH
LEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICLHIRAGITKQQVSESLAYTKK
HHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
ISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFS
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENYTVKKVLNNNVIIANWREEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSEN
CCCCCHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCHHCHHEEEEEHHHHHHHH
YNKVLDNIDNKIVGVSEEIINFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPF
HHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCH
LEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICLHIRAGITKQQVSESLAYTKK
HHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
ISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFS
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902727; 9384377 [H]