| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is yybG [H]
Identifier: 170755327
GI number: 170755327
Start: 693698
End: 694546
Strand: Reverse
Name: yybG [H]
Synonym: CLD_0183
Alternate gene names: 170755327
Gene position: 694546-693698 (Counterclockwise)
Preceding gene: 170757570
Following gene: 170756326
Centisome position: 17.55
GC content: 27.8
Gene sequence:
>849_bases ATGATACATAAAGATAGAAAAATACAAGAGAGTCTAAAAATTGATTGTAAAAATTGTTTCGGGCTTTGCTGTACCGCATT ATATTTTTCTAAGTCAGATGGATTTCCAAAGGATAAGGAATCAGGAAAGCCATGTATAAATTTAGATGGAGAATTTAAAT GTAAAATCCATAAGGAGCTTAGAAGAAAAGGATTAAAAGGATGTACTGCATATGATTGTTTTGGAGCAGGACAAAAAATT GCTAAAGTTACTTATAAAGGTGAAAATTGGAAAGAGAATCCTAGAATTTCTCAACAGATGTTTGATGTATTTTTAGTTAT GAGACAAATTCATGAAATGTTATGGTATTTATCAGAGGCTTCAAGAATGCAAGATGATTTAAATATTAAATATAAAATAA ATAATATGATTACGGAAATAGTTAAAATCTCTAATTTAGATGCAGTTTCATTAATAAAATTAGATTTAGTTATATATAGA AGTAAAGTAAATGCACTACTTTTAGAAACAAGTAAATTTATAAGAAATAAATATAAAAAAGGTAAAAGTTCTAATATAAA TCATAAGAAATTAATAGCGGGACGATTAAATTTAATTGGGGCAGATTTAAAAAAGAAAAAATTAGTAGGAGAGAATTTAA GTGGTGCACTTTTAATTGCAGCAGACCTCAAAGGAATAAACTTAAGTGGAGTAGATTTCTTAGGTGCTGATTTAAGAGAT ACTGACTTAAGAGGTGCAGATTTATCAAGAAGTATTTATCTTACACAACTTCAACTAAACTCTGCCAAAGGTGATATAAA TACAAAATTACCAATATCATTAAGTCGCCCAGAACATTGGTGTGATTAA
Upstream 100 bases:
>100_bases AGTCGTAATTGTAAACTAAATTATCTAAATAAATACTAATGAATCATACAACAAATTAATTAAGAAAATAAAGATTGATA TAAATGGAGTGATAATAATC
Downstream 100 bases:
>100_bases ATGTTTATAAATAATATTCTTATTTAACATTATAACTGAAAAACAAATGATTTACTAAAACACCGTATTATTTAGTTCTG ATATGCTGCCCTTAAAGTAG
Product: pentapeptide repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MIHKDRKIQESLKIDCKNCFGLCCTALYFSKSDGFPKDKESGKPCINLDGEFKCKIHKELRRKGLKGCTAYDCFGAGQKI AKVTYKGENWKENPRISQQMFDVFLVMRQIHEMLWYLSEASRMQDDLNIKYKINNMITEIVKISNLDAVSLIKLDLVIYR SKVNALLLETSKFIRNKYKKGKSSNINHKKLIAGRLNLIGADLKKKKLVGENLSGALLIAADLKGINLSGVDFLGADLRD TDLRGADLSRSIYLTQLQLNSAKGDINTKLPISLSRPEHWCD
Sequences:
>Translated_282_residues MIHKDRKIQESLKIDCKNCFGLCCTALYFSKSDGFPKDKESGKPCINLDGEFKCKIHKELRRKGLKGCTAYDCFGAGQKI AKVTYKGENWKENPRISQQMFDVFLVMRQIHEMLWYLSEASRMQDDLNIKYKINNMITEIVKISNLDAVSLIKLDLVIYR SKVNALLLETSKFIRNKYKKGKSSNINHKKLIAGRLNLIGADLKKKKLVGENLSGALLIAADLKGINLSGVDFLGADLRD TDLRGADLSRSIYLTQLQLNSAKGDINTKLPISLSRPEHWCD >Mature_282_residues MIHKDRKIQESLKIDCKNCFGLCCTALYFSKSDGFPKDKESGKPCINLDGEFKCKIHKELRRKGLKGCTAYDCFGAGQKI AKVTYKGENWKENPRISQQMFDVFLVMRQIHEMLWYLSEASRMQDDLNIKYKINNMITEIVKISNLDAVSLIKLDLVIYR SKVNALLLETSKFIRNKYKKGKSSNINHKKLIAGRLNLIGADLKKKKLVGENLSGALLIAADLKGINLSGVDFLGADLRD TDLRGADLSRSIYLTQLQLNSAKGDINTKLPISLSRPEHWCD
Specific function: Unknown
COG id: COG1357
COG function: function code S; Uncharacterized low-complexity proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001646 [H]
Pfam domain/function: PF00805 Pentapeptide [H]
EC number: NA
Molecular weight: Translated: 31937; Mature: 31937
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHKDRKIQESLKIDCKNCFGLCCTALYFSKSDGFPKDKESGKPCINLDGEFKCKIHKEL CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEHHHH RRKGLKGCTAYDCFGAGQKIAKVTYKGENWKENPRISQQMFDVFLVMRQIHEMLWYLSEA HHCCCCCCCEEHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SRMQDDLNIKYKINNMITEIVKISNLDAVSLIKLDLVIYRSKVNALLLETSKFIRNKYKK HHHHHCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GKSSNINHKKLIAGRLNLIGADLKKKKLVGENLSGALLIAADLKGINLSGVDFLGADLRD CCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCC TDLRGADLSRSIYLTQLQLNSAKGDINTKLPISLSRPEHWCD CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEECCCCCCCC >Mature Secondary Structure MIHKDRKIQESLKIDCKNCFGLCCTALYFSKSDGFPKDKESGKPCINLDGEFKCKIHKEL CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEHHHH RRKGLKGCTAYDCFGAGQKIAKVTYKGENWKENPRISQQMFDVFLVMRQIHEMLWYLSEA HHCCCCCCCEEHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SRMQDDLNIKYKINNMITEIVKISNLDAVSLIKLDLVIYRSKVNALLLETSKFIRNKYKK HHHHHCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GKSSNINHKKLIAGRLNLIGADLKKKKLVGENLSGALLIAADLKGINLSGVDFLGADLRD CCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCC TDLRGADLSRSIYLTQLQLNSAKGDINTKLPISLSRPEHWCD CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]